New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4930594 =	75 (1.250)	9 (0.160)	6/248	NT	12.0%	coding (379/789 nt)	cheZ	protein phosphatase CheZ
	?	NC_002947	4930639 =	62 (1.110)					coding (334/789 nt)	cheZ	protein phosphatase CheZ

ACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4930640‑4930594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcaccgGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGAAACTGACGATGG  >  NC_002947/4930639‑4930785                                                                                                                                                                                                    ACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCT                                               >  8:256899/1‑149   CGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGCCCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCT                                             >  6:3499/1‑149   CGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCT                                             >  3:48192/1‑149   CGGTGCTCAATGAGCTGGCCAACGAGGCCAACGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCT                                             >  5:311656/1‑149       GCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTG                                         >  1:360254/1‑149                    GCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATG                              <  4:48192/147‑1                    GCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATG                              <  7:256899/147‑1                              CCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATC                  <  5:3499/149‑1                               CAAGGCCCTGAGCACCGGGGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCT                 <  2:360254/149‑1                                  GGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGA              <  6:311656/149‑1                                       TGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCTCATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGG                         <  1:299071/133‑1                                       TGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGG                         >  2:299071/1‑133                                        GAGCACCGGTGTGCTTTCCTCGACCTGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGAAACTG         <  2:356806/148‑1                                              CGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGAAACTGACGATGG  <  6:249051/149‑1                                              CGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGAAACTGACGATGG  <  7:115582/149‑1                                                                                                                                                                                                    ACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4930640‑4930594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcaccgGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGAAACTGACGATGG  >  NC_002947/4930639‑4930785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.