| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5141238 = | 66 (1.100) | 4 (0.070) | 4/256 | NT | 6.2% | coding (324/894 nt) | PP_4525 | LysR family transcriptional regulator |
| ? | NC_002947 | 5141272 = | 58 (1.000) | coding (290/894 nt) | PP_4525 | LysR family transcriptional regulator | |||||
GCCAGCAGGCAAGGTGCTGCTGGACTATGCCAACCGTATGTCCGCCTTGCGCGACGAAGCGCTGGGCGCCGTGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5141388‑5141238‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAG > NC_002947/5141272‑5141417 GCCAGCAGGCAAGGTGCTGCTGGACTATGCCAACCGTATGTCCGCCTTGCGCGACGAAGCGCTGGGCGCCGTGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGC > 5:137022/1‑149GCCAGCAGGCAAGGTGCTGCTGGACTATGCCAACCGTATGTCCGCCTTGCGCGACGAAGCGCTGGGCGCCGTGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTG < 5:263932/148‑1 CCAGCAGGCAAGGTGCTGCTGGACTATGCCAACCGTATGTCCGCCTTGCGCGACGAAGCGCTGGGCGCCGTGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGCT > 4:176141/1‑149 ACAGCACGGCGGCGACCCACTTGCCGGCGTTGCTGTACATGGTCCGCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCT > 1:262307/1‑149 AGCACGGCGGCGACCCACTTGCCGGCGTTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGC > 7:82343/1‑122 AGCACGGCGGCGACCCACTTGCCGGCGTTGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGC < 8:82343/122‑1 CACGGCGGCGACCCACTTGCCGGCG‑TGCTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGA > 6:67440/1‑149 CTGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAG < 1:147845/149‑1 TGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAG > 1:8654/1‑148 TGTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAG > 8:205271/1‑148 GTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAG < 7:34064/99‑1 GTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAG > 8:34064/1‑99 GCCAGCAGGCAAGGTGCTGCTGGACTATGCCAACCGTATGTCCGCCTTGCGCGACGAAGCGCTGGGCGCCGTGCGTGGCGGTCAGCCGGCTGGGGACTTCGTGCTGGGGACCATGTACAGCACGGCGGCGACCCACTTGCCGGCGTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5141388‑5141238‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgTACATGGTCCCCAGCACGAAGTCCCCAGCCGGCTGACCGCCACGCACGGCGCCCAGCGCTTCGTCGCGCAAGGCGGACATACGGTTGGCATAGTCCAGCAGCACCTTGCCTGCTGGCGACAGTTGCAGGCGCTGACGTTCGCGCAG > NC_002947/5141272‑5141417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |