New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5404701	49 (0.810)	3 (0.050)	3/252	NT	5.6%	coding (519/801 nt)	PP_4748	amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 5404753	54 (0.950)					coding (467/801 nt)	PP_4748	amino acid ABC transporter substrate‑binding protein

GGCCTTGGTGTACGGGAAGGCGCTCTGCCCGGGCTCAAGCGTGGCCTTGACCCGTTGATCGGGCTCGGACACCTTGATGCTCTTGCCGGGGTAGCCGCCCTTCTGCTGCGAAGAAACGGCCACCGCGAAGCTGTCCGCGCCAACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5404554‑5404701 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctggTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGTTGGCGCGGACAGCTTCGCGGTGGCCGTTTCTTCGCAGCAGAAGGGCGGCTACCCCGGCAAGAGCATCAAGGTGTCCGAGCCCGATCAACG  <  NC_002947/5404753‑5404606                                                                                                                                                                                                                                                                                                          GGCCTTGGTGTACGGGAAGGCGCTCTGCCCGGGCTCAAGCGTGGCCTTGACCCGTTGATCGGGCTCGGACACCTTGATGCTCTTGCCGGGGTAGCCGCCCTTCTGCTGCGAAGAAACGGCCACCGCGAAGCTGTCCGCGCCAACCTGG                                                                                                                                                      <  5:315434/148‑1                                                           TCGGGCTCGGACACCTTGATGCTCGTGCCGGGGTAGCCGCCCTTCTGCTGCGAAGAAACGGCCACCGCGAAGCTGTCCGCGCCAACCTTGTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGT                                                                                            <  6:61074/148‑1                                                             GGGCTCGGACACCTTGATGCTCTTGCCGGGGTAGCCGCCCTTCTGCTGCGAAGAAACGGCCACCGCGAAGCTGTCCGCGCCAACCTGGTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGTTGG                                                                                         >  3:172924/1‑149                                                               GCTCGGACACCTTGATGCTCTTGCCGGGGTAGCCGCCCTTCTGCTGCGAAGAAACGGCCACCGCGAAGCTGTCCGCGCCAACCTGGTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGTTGGCG                                                                                       <  4:172924/149‑1                                                                                                                                                  TGGTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGTTGGCGCGGGCAGCTTCGCGGTGGCCGTTTCTTCGCAGCAGAAGGGCGGCTACCCCGGCAAGAGCATCAAGGTGTCCGAGCCCGAGCAA    >  2:289385/1‑149                                                                                                                                                   GGTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGTTGGCGCGGACAGCTTCGCGGTGGCCGTTTCTTCGCAGCAGAAGGGCGGCTACCCCGGCAAGAGCATCAAGGTGTCCGAGCCCGATCAAC   >  2:178566/1‑149                                                                                                                                                   GGTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGTTGGCGCGGACAGCTTCGCGGTGGCCGTTTCTTCGCAGCAGAAGGGCGGCTACCCCGGCAAGAGCATCAAGGTGTCCGAGCCCGATCAAC   <  2:180341/149‑1                                                                                                                                                    GTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGTTGGCGCGGACAGCTTCGCGGTGGCCGTTTCTTCGCAGCAGAAGGGCGGCTACCCCGGCAAGAGCATCAAGGTGTCCGAGCCCGATCAACG  <  2:1884/149‑1                                                                                                                                                                                                                                                                                                          GGCCTTGGTGTACGGGAAGGCGCTCTGCCCGGGCTCAAGCGTGGCCTTGACCCGTTGATCGGGCTCGGACACCTTGATGCTCTTGCCGGGGTAGCCGCCCTTCTGCTGCGAAGAAACGGCCACCGCGAAGCTGTCCGCGCCAACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5404554‑5404701 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctggTGCTCTACCCGAACCCCGTGGCCATGGCCCAGGACCTGACGTCCAGGCGCATCCAGGTTGGCGCGGACAGCTTCGCGGTGGCCGTTTCTTCGCAGCAGAAGGGCGGCTACCCCGGCAAGAGCATCAAGGTGTCCGAGCCCGATCAACG  <  NC_002947/5404753‑5404606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.