| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5487124 = | 67 (1.110) | 4 (0.070) | 4/256 | NT | 5.8% | coding (453/2772 nt) | PP_4824 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 5487166 = | 65 (1.120) | coding (495/2772 nt) | PP_4824 | two‑component system sensor histidine kinase/response regulator | |||||
GGGTGGTGCTGGAGCGGGTGTAGAGGAAGCGGATCAGGTTGTGCATGATCAGCATGATCAGGCCGCCGAACAGCATGCCGAACAGCAGCGGCTGGCGTTGATCCGAGGCTGCCTCGGCCGCAGGCTCAAGGCTGATGGCCGGACGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5487272‑5487124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcCTCGGATCAACGCCAGCCGCTGCTGTTCGGCATGCTGTTCGGCGGCCTGATCATGCTGATCATGCACAACCTGATCCGCTTCCTCTACACCCGCTCCAGCACCACCCTGATCCTGGCGCTGTACCACGGCCTGATGCTGCTCAGCG > NC_002947/5487166‑5487311 GGGTGGTGCTGGAGCGGGTGTAGAGGAAGCGGATCAGGTTGTGCATGATCAGCATGATCAGGCCGCCGAACAGCATGCCGAACAGCAGCGGCTGGCGTTGATCCGAGGCTGCCTCGGCCGCAGGCTCAAGGCTGATGGCCGGACGCAGC > 8:137920/1‑149 CTGCCTCGGCCGCAGGCTCAAGGCTGATGGCCGGACGCAGCCTCGGATCAACGCCAGCCGCTGCTGTTCGGCATGCTGTTCGGCGGCCTGATCATGCTGATCATGCACAACCTGATCCGCTTCCTCTACACCCGCTCCAG > 7:109262/1‑140 CTGCCTCGGCCGCAGGCTCAAGGCTGATGGCCGGACGCAGCCTCGGATCAACGCCAGCCGCTGCTGTTCGGCATGCTGTTCGGCGGCCTGATCATGCTGATCATGCACAACCTGATCCGCTTCCTCTACACCCGCTCCAG < 8:109262/140‑1 GCCTCGGCCGCAGGCTCAAGGCTGATGGCCGGACGCAGCCTCGGATCAACGCCAGCCGCTGCTGTTCGGCATGCTGTTCGGCGGCCTGATCATGCTGATCATGCACAACCTGATCCGCTTCCTCTACACCCGCTCCAGCACCACCC < 7:219433/146‑1 GCCTCGGCCGCAGGCTCAAGGCTGATGGCCGGACGCAGCCTCGGATCAACGCCAGCCGCTGCTGTTCGGCATGCTGTTCGGCGGCCTGATCATGCTGATCATGCACAACCTGATCCGCTTCCTCTACACCCGCTCCAGCACCACCC > 8:219433/1‑146 AGCCTCGGATCAACGCCAGCCGCTGCTGTTCGGCATGCTGTTCGGCGGCCTGATCATGCTGATCATGCACAACCTGATCCGCTTCCTCTACACCCGCTCCAGCACCACCCTGATCCTGGCGCTGTACCACGGCCTGATGCTGCTCAGCG < 4:170706/149‑1 AGCCTCGGATCAACGCCAGCCGCTGCTGTTCGGCATGCTGTTCGGCGGCCTGATCATGCTGATCATGCACAACCTGATCCGCTTCCTCTACACCCGCTCCAGCACCACCCTGATCCTGGCGCTGTACCACGGCCTGATGCTGCTCAGCG < 8:40264/149‑1 GGGTGGTGCTGGAGCGGGTGTAGAGGAAGCGGATCAGGTTGTGCATGATCAGCATGATCAGGCCGCCGAACAGCATGCCGAACAGCAGCGGCTGGCGTTGATCCGAGGCTGCCTCGGCCGCAGGCTCAAGGCTGATGGCCGGACGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5487272‑5487124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcCTCGGATCAACGCCAGCCGCTGCTGTTCGGCATGCTGTTCGGCGGCCTGATCATGCTGATCATGCACAACCTGATCCGCTTCCTCTACACCCGCTCCAGCACCACCCTGATCCTGGCGCTGTACCACGGCCTGATGCTGCTCAGCG > NC_002947/5487166‑5487311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |