New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5703048 =	83 (1.380)	5 (0.090)	5/258	NT	6.0%	coding (883/1683 nt)	phaC‑II	poly(3‑hydroxyalkanoate) polymerase
	?	NC_002947	5703087 =	76 (1.300)					coding (922/1683 nt)	phaC‑II	poly(3‑hydroxyalkanoate) polymerase

TGGTCTGCTCATCGGCGAACAGGCTGGCCGGGCTTTCGAACTTGCTGTCCAGCAAGCTGACCAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTGGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5703198‑5703048 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCATCTGCAAGCCAAGAAGCAATTGCGCCGGGTGCGCAGTGCCACGTATCTGGTCAGCTTGCTGGACAGCAAGTTCGAAAGCCCGGCCAGCCTGTTCGCCGATGAGCAGACCATCGAAGCGGCCAAGCGACGCTCCTATCAGCGTGGC  >  NC_002947/5703087‑5703233                                                                                                                                                                                                                                                                                                             TGGTCTGCTCATCGGCGAACAGGCTGGCCGGGCTTTCGAACTTGCTGTCCAGCAAGCTGACCAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTGGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGGCGC‑CGGCACAG                                                                                                                                                       <  2:157832/149‑1   GTCTGCTCATCGGCGAACAGGCTGGCCGGGCTTTCGAACTTGCTGTCCAGCAAGCTGACCAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTGGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGG                                                                                                                                                      >  7:252578/1‑148                                            GCTGTCCAGCAAGCTGACCAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTGGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAG                                                                                                                                                       >  1:154622/1‑106                                            GCTGTCCAGCAAGCTGACCAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTGGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAG                                                                                                                                                       <  2:154622/106‑1                                                   AGCAAGCTGACCAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTGGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGG                                                                                                                                                      <  3:239176/100‑1                                                   AGCAAGCTGACCAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTGGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGG                                                                                                                                                      >  4:239176/1‑100                                                              CAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTAGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGGC                                                                                                                                                     <  5:261834/90‑1                                                              CAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTAGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGGC                                                                                                                                                     >  6:261834/1‑90                                                                                                            AGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGGCCATCTGCAAGCCAAGAAGCAATTGCGCCGGGTGCGCAGTGCCACGTATCTGGTCAGCTTGCTGGACAGCAAGTTCGAAAGCCCG                                                                 >  3:321366/1‑128                                                                                                            AGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGGCCATCTGCAAGCCAAGAAGCAATTGCGCCGGGTGCGCAGTGCCACGTATCTGGTCAGCTTGCTGGACAGCAAGTTCGAAAGCCCG                                                                 <  4:321366/128‑1                                                                                                              ATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGGCCATCTGCAAGCCAAGAAGCAATTGCGCCGGGTGCGCAGTGCCACGTATCTGGTCAGCTTGCTGGACAGCAAGTTCGAAAGCCCGGCCAGCCTGTTCGCC                                                  >  3:188793/1‑141                                                                                                              ATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGGCCATCTGCAAGCCAAGAAGCAATTGCGCCGGGTGCGCAGTGCCACGTATCTGGTCAGCTTGCTGGACAGCAAGTTCGAAAGCCCGGCCAGCCTGTTCGCC                                                  <  4:188793/141‑1                                                                                                                    TTGCAGTGCGGCCATGGTCAGGCCGCACTGCA‑AGGCCATCTGCAAGCCAAGAAGCAATTGCGCCGGGTGCGCAGTGCCACGTATCTGGTCAGCTTGCTGGACAGCAAGTTCGAAAGCCCGGCCAGCCTGTTCGCCGATGAGCAGACCA                                     >  7:343825/1‑148                                                                                                                                                       GCCATCTGCAAGCCAAGAAGCAATTGCGCCGGGTGCGCAGTGCCACGTATCTGGTCAGCTTGCTGGACAGCAAGTTCGAAAGCCCGGCCAGCCTGTTCGCCGATGAGCAGACCATCGAAGCGGCCAAGCGACGCTCCTATCAGCGTGGC  <  3:293220/149‑1                                                                                                                                                                                                                                                                                                             TGGTCTGCTCATCGGCGAACAGGCTGGCCGGGCTTTCGAACTTGCTGTCCAGCAAGCTGACCAGATACGTGGCACTGCGCACCCGGCGCAATTGCTTCTTGGCTTGCAGATGGCCTTGCAGTGCGGCCATGGTCAGGCCGC‑CGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5703198‑5703048 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCATCTGCAAGCCAAGAAGCAATTGCGCCGGGTGCGCAGTGCCACGTATCTGGTCAGCTTGCTGGACAGCAAGTTCGAAAGCCCGGCCAGCCTGTTCGCCGATGAGCAGACCATCGAAGCGGCCAAGCGACGCTCCTATCAGCGTGGC  >  NC_002947/5703087‑5703233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.