| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5734041 | 53 (0.880) | 7 (0.130) | 5/242 | NT | 12.4% | intergenic (‑67/+90) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
| ? | NC_002947 | = 5734096 | 51 (0.930) | intergenic (‑122/+35) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase | |||||
GTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5733882‑5734041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttcgcgggcGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAA < NC_002947/5734096‑5733960 GTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCC < 7:106019/149‑1 TAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCC > 1:200354/1‑149 TAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCC > 7:20808/1‑149 AAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTT > 8:152393/1‑149 AAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTT > 6:7856/1‑149 AGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGC < 3:217805/149‑1 GCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGG < 3:114031/149‑1 GCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGG < 8:211662/149‑1 GCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGG < 4:260269/149‑1 GCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGG < 6:184158/149‑1 CGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGC < 2:200354/149‑1 CGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGC < 7:152393/149‑1 CGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCGCGCCC > 7:93556/1‑149 CGATGGAGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCCGCTGGGC‑GGCCCTTCGCGGGCGCGCCCG > 3:35587/1‑149 GGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCCCGCCCGCggcca > 4:104265/1‑144 AGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGC < 3:193224/148‑1 ACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA < 8:93556/149‑1 TTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGG > 7:342190/1‑103 TTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGG < 8:342190/103‑1 ccgTTCGCGGGGGCGCCCGCTCGCACAGAAGTAGGGGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAA < 7:178686/146‑1 GTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5733882‑5734041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttcgcgggcGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAA < NC_002947/5734096‑5733960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |