New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5745137 =	76 (1.260)	4 (0.070)	4/252	NT	5.7%	coding (728/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	5745181 =	60 (1.050)					coding (684/2451 nt)	glgP	glycogen phosphorylase

GGCAGTGTCGAAACGGTGCACGATGCAAGCGGTACCCAGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCGGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5745291‑5745137 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggaTCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTAGATCACCTCGGCGCGCTC  >  NC_002947/5745181‑5745327                                                                                                                                                                                                                                                                                                                GGCAGTGTCGAAACGGTGCACGATGCAAGCGGTACCCAGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCGGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGC                                                                                                                                                           >  3:200917/1‑149     GTGTCGAAACGGTGCACGATGCAAGCGGTACCCAGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCAGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTG                                                                                                                                                       <  1:367263/149‑1     GTGGCGAAACGGTGCACGATGCAAGCGGTACCCAGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCGGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTG                                                                                                                                                       <  8:162943/149‑1      tggccAAACGGGGCACGATCCAAGCGGTACCCCGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCGGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGG                                                                                                                                                      <  2:146341/144‑1        TCGAAACGGTGCACGATGCAAGCGGTACCCAGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCGGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCT                                                                                                                                                        <  3:41805/145‑1        TCGAAACGGTGCACGATGCAAGCGGTACCCAGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCGGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCT                                                                                                                                                        >  4:41805/1‑145         CGAAACGGTGCACGATGCAAGCGGTACCCAGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCGGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGG                                                                                                                                                      >  7:258863/1‑146                                                                                                            TGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTT                                                >  1:64287/1‑149                                                                                                            TGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTT                                                <  2:64287/149‑1                                                                                                                TCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGAC                                            >  1:168991/1‑149                                                                                                                         AACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCC                                   <  2:168991/149‑1                                                                                                                                                      GCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTAGATCACCTCGGCGC      >  2:242149/1‑149                                                                                                                                                      GCTGGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTAGATCACCTCGGCGC      >  1:169361/1‑149                                                                                                                                                         GGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTAGATCACCTCGGCGCGCT   >  4:338309/1‑149                                                                                                                                                         GGATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTAGATCACCTCGGCGCGCT   >  5:137867/1‑149                                                                                                                                                          GATCCAGGCCAGCCGACTCCCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGGACCGCTTGCATCGTGCTCCGTTTCGACACTGCCGCCAACGCTGATCGGGTAGATCACCTCGGCGCGCTC  <  6:121281/149‑1                                                                                                                                                          GATCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTAGATCACCTCGGCGCGCTC  <  3:338309/149‑1                                                                                                                                                                                                                                                                                                                GGCAGTGTCGAAACGGTGCACGATGCAAGCGGTACCCAGCGCCAGGTATGGTGGCCGGGCGAGACGGTGCGGGCGGTTGCCTACGACACGCCGGTAGTCGGCTGGCGTGGATCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5745291‑5745137 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggaTCCACGCCAGCCGACTACCGGCGTGTCGTAGGCAACCGCCCGCACCGTCTCGCCCGGCCACCATACCTGGCGCTGGGTACCGCTTGCATCGTGCACCGTTTCGACACTGCCGCCAAAGCTGATCGGGTAGATCACCTCGGCGCGCTC  >  NC_002947/5745181‑5745327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.