New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5969511	56 (0.930)	3 (0.050)	3/256	NT	5.9%	coding (1783/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	= 5969543	42 (0.730)					coding (1751/2124 nt)	PP_5236	hypothetical protein

AGGATCTGAGCCTGGATATCACCAATGGCCGAATCCCTTGGTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5969360‑5969511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGTGCCAGCGCCGAACTGGGGCTGGCCTGGATGCAGGGGCGTGGCACCCGCAAGCAAAGCCGCTTTGCCGCCATCCAATGGGTCAACCGAGCGGCCAGCTTGCAACC  <  NC_002947/5969543‑5969399                                                                                                                                                                                                                                                                                                           AGGATCTGAGCCTGGATATCACCAATGGCCGAATCCCTAGGTTGCAAGCTGGCCGCTCGGTTGCCCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGACCCAGTTCGGCGCTGGCACGCCC                                                                                                                                                      >  6:381194/1‑149                                     CTTGGTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTG                                                                                                                  >  6:361088/1‑149                                         GTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGG                                                                                                              <  8:115532/149‑1                                             CAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGT                                                                                                          <  5:361088/149‑1                                                                                                                                                     CTGCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGTGCCAGCGCCGAACTGGGGCTGGCCTGGATGCAGGGGCGTGGCACCCGCAAGCAAAGCCGCTTTGCCGCCATCCAATGGGTCAACCGAGCGGCCAGCTTGCAAC   >  3:138774/1‑148                                                                                                                                                      TGCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGTGCCAGCGCCGAACTGGGGCTGGCCTGGATGCAGGGGCGTGGCACCCGCAAGCAAAGCCGCTTTGCCGCCATCCAATGGGTCAACCGAGCGGCCAGCTTGCAACC  >  3:121275/1‑148                                                                                                                                                      TGCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGTGCCAGCGCCGAACTGGGGCTGGCCTGGATGCAGGGGCGTGGCACCCGCAAGCAAAGCCGCTTTGCCGCCATCCAATGGGTCAACCGAGCGGCCAGCTTGCAACC  >  5:205618/1‑148                                                                                                                                                       GCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGTGCCAGCGCCGAACTGGGGCTGGCCTGGATGCAGGGGCGTGGCACCCGCAAGCAAAGCCGCTTTGCCGCCATCCAATGGGTCAACCGAGCGGCCAGCTTGCAACC  >  2:72270/1‑147                                                                                                                                                       GCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGTGCCAGCGCCGAACTGGGGCTGGCCTGGATGCAGGGGCGTGGCACCCGCAAGCAAAGCCGCTTTGCCGCCATCCAATGGGTCAACCGAGCGGCCAGCTTGCAACC  >  3:153301/1‑147                                                                                                                                                       GCTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGTGCCAGCGCCGAACTGGGGCTGGCCTGGATGCAGGGGCGTGGCACCCGCAAGCAAAGCCGCTTTGCCGCCATCCAATGGGTCAACCGAGCGGCCAGCTTGCAACC  >  7:196935/1‑147                                                                                                                                                                                                                                                                                                           AGGATCTGAGCCTGGATATCACCAATGGCCGAATCCCTTGGTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5969360‑5969511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcTGAGCCTGGTCGAGCACCCGGACCCGTGGCTTGCAGGGCGTGCCAGCGCCGAACTGGGGCTGGCCTGGATGCAGGGGCGTGGCACCCGCAAGCAAAGCCGCTTTGCCGCCATCCAATGGGTCAACCGAGCGGCCAGCTTGCAACC  <  NC_002947/5969543‑5969399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.