New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5969511	56 (0.930)	3 (0.050)	3/256	NT	5.9%	coding (1783/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	= 5969543	42 (0.730)					coding (1751/2124 nt)	PP_5236	hypothetical protein

GGTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGGCGCCTGACCGCCAGCATGGCACTGCGCTC  >  NC_002947/5969399‑5969691                                                                                                                                                 |                                                                                                                                                     ggTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgca                                                                                                                                                   >  5:205618‑M2/1‑145 (MQ=255) ggTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgca                                                                                                                                                   >  3:121275‑M2/1‑145 (MQ=255) ggTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgc                                                                                                                                                    >  3:153301‑M2/1‑145 (MQ=255) ggTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgc                                                                                                                                                    >  2:72270‑M2/1‑145 (MQ=255) ggTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgc                                                                                                                                                    >  7:196935‑M2/1‑145 (MQ=255)  gTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgcag                                                                                                                                                  >  3:138774‑M2/1‑144 (MQ=255)      cAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTaa                                                                                                                                              <  2:11299/148‑1 (MQ=255)      cAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAg                                                                                                                                             >  7:211095/1‑149 (MQ=255)       aaGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCACCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCCACCAGGCTCAGCATGTAAg                                                                                                                                             >  6:123285/1‑148 (MQ=255)                gCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTc                                                                                                                                   >  7:211845/1‑149 (MQ=255)                  tCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCAc                                                                                                                                 <  1:134929/149‑1 (MQ=255)                        gACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCt                                                                                                                           >  3:76582/1‑149 (MQ=255)                        gACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCt                                                                                                                           >  4:46113/1‑149 (MQ=255)                           ccATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCCGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCGCCCTTCgggccg                                                                                                                        >  8:256049/1‑144 (MQ=255)                             aTTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTgc                                                                                                                      <  8:147873/149‑1 (MQ=255)                                 gATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCt                                                                                                                  <  3:363668/149‑1 (MQ=255)                                   tGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCa                                                                                                                <  3:46113/149‑1 (MQ=255)                                       ggcAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCa                                                                                                             >  6:322679/1‑148 (MQ=255)                                                gCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGt                                                                                                    >  7:87124/1‑148 (MQ=255)                                                         gcGGGTGCCACGCCCCTGCATCCAGTCCAGCACCAGTTCGGCGCTGGCACGCCCTTCAAGCCAAGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATc                                                                                           <  5:381194/148‑1 (MQ=255)                                                             gTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAg                                                                                      >  6:100183/1‑149 (MQ=255)                                                                ccACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGt                                                                                    <  5:247779/148‑1 (MQ=255)                                                                      cccTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACcg                                                                             >  3:358967/1‑149 (MQ=255)                                                                      cccTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACcg                                                                             >  3:264147/1‑149 (MQ=255)                                                                        cTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACcgcg                                                                           <  5:322679/149‑1 (MQ=255)                                                                        cTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACcgcg                                                                           >  1:155682/1‑149 (MQ=255)                                                                            aTCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCCAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGcaca                                                                       >  5:292029/1‑149 (MQ=255)                                                                            aTCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGcaca                                                                       <  8:87124/149‑1 (MQ=255)                                                                             tCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCacac                                                                      >  5:54309/1‑149 (MQ=255)                                                                               cAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCTACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACg                                                                     >  6:295165/1‑148 (MQ=255)                                                                                aGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCAc                                                                                                               >  2:252805/1‑105 (MQ=255)                                                                                aGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCAc                                                                                                               <  1:252805/105‑1 (MQ=255)                                                                                  gCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCAtt                                                                 <  1:149202/149‑1 (MQ=255)                                                                                   ccAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTg                                                                <  4:96557/149‑1 (MQ=255)                                                                                   ccAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTg                                                                <  8:211095/149‑1 (MQ=255)                                                                                    cAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCTACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTgg                                                               <  5:295165/149‑1 (MQ=255)                                                                                        cccAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTg                                                           <  2:112227/149‑1 (MQ=255)                                                                                        cccAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTCCAACCGCGCACACGCATTGGTCTg                                                           >  2:44995/1‑149 (MQ=255)                                                                                         ccAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCACCCGCCTCCCTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGc                                                          >  1:250985/1‑149 (MQ=255)                                                                                         ccAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGc                                                          >  5:157957/1‑149 (MQ=255)                                                                                          cAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGcc                                                         >  7:355129/1‑149 (MQ=255)                                                                                               cGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGtt                                                     <  1:44995/148‑1 (MQ=255)                                                                                                         aCGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgcagggcgtgccagcgccgaactggggctggcctggatgcaggggcgtggcacccgcaagcaaagccgctttgccgccatccaatgggtcaaccgagcggccagcttg                                          <  5:361088‑M2/149‑109 (MQ=255)                                                                                                             ccTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgcagggcgtgccagcgccgaactggggctggcctggatgcaggggcgtggcacccgcaagcaaagccgctttgccgccatccaatgggtcaaccgagcggccagcttgcaac                                      <  8:115532‑M2/149‑113 (MQ=255)                                                                                                               tGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGAc                                      >  6:51978/1‑147 (MQ=255)                                                                                                                 cAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAgcagggcgtgccagcgccgaactggggctggcctggatgcaggggcgtggcacccgcaagcaaagccgctttgccgccatccaatgggtcaaccgagcggccagcttgcaaccaag                                  >  6:361088‑M2/1‑33 (MQ=255)                                                                                                                 cAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACaa                                    <  4:76582/147‑1 (MQ=255)                                                                                                                    gCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCCCACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAgg                               >  5:184300/1‑149 (MQ=255)                                                                                                                     ccACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGgc                              >  6:195472/1‑149 (MQ=255)                                                                                                                      cACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGgcg                             >  3:8273/1‑149 (MQ=255)                                                                                                                       aCGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGgcgc                            >  6:351629/1‑149 (MQ=255)                                                                                                                       aCGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGgcgc                            >  5:228471/1‑149 (MQ=255)                                                                                                                       aCGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCGCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGgcgc                            <  6:292029/149‑1 (MQ=255)                                                                                                                                           aGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGGCGCCTGACCGCCAGCATGGCACt        >  4:67831/1‑149 (MQ=255)                                                                                                                                             gCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGGCGCCTGACCGCCAGCATGGCACTgc      <  6:228471/149‑1 (MQ=255)                                                                                                                                                 agcagGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGGCGCCTGACCGCCAGCATGGCACTGCGCTc  <  8:211845/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GGTTGCAAGCTGGCCGCTCGGTTGACCCATTGGATGGCGGCAAAGCGGCTTTGCTTGCGGGTGCCACGCCCCTGCATCCAGGCCAGCCCCAGTTCGGCGCTGGCACGCCCTGCAAGCCACGGGTCCGGGTGCTCGACCAGGCTCAGCAGGTAAGCAACCGCCTCACTTCGCTCCTGCGCCTCACCAAACCGGCGTAACAAAATCCCCAGGTGCAACCGCGCACACGCATTGGTCTGCCCGTTGCCCAGCGCGTCGACAAGCAGGCGCCTGACCGCCAGCATGGCACTGCGCTC  >  NC_002947/5969399‑5969691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.