| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6020430 = | 63 (1.050) | 7 (0.120) | 4/256 | NT | 11.3% | coding (219/1305 nt) | dadA‑II | D‑amino acid:quinone oxidoreductase |
| ? | NC_002947 | 6020475 = | 49 (0.850) | coding (174/1305 nt) | dadA‑II | D‑amino acid:quinone oxidoreductase | |||||
TCGAAGTCACGGTGGTCGACCGCCAGCCGGCGGTGGCCATGGAAACCAGCTTTGCCAACGCCGGCCAGATCTCGCCCGGCTATG‑‑CCTCGCCCTGGGCTGCGCCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6020578‑6020430‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAGGTAGTAGGCACTGGCGGTTCCGAT > NC_002947/6020475‑6020618 TCGAAGTCACGGTGGTCGACCGCCAGCCGGCGGTGGCCATGGAAACCAGCTTTGCCAACGCCGGCCAGATCTCGCCCGGCTATG‑‑CCTCGCCCTGGGCTGCACCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGC < 3:12647/148‑1 CGAAGTCACGGTGGTCGACCGCCAGCCGGCGGTGGCCATGGAAACCAGCTTTGCCAACGCCGGCCAGATCTCGCCCGGCTATGCCCCTCGCCCTGGGCTGCGCCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACG < 1:293893/148‑1 GAAGTCACGGTGGTCGACCGCCAGCCGGCGGTGGCCATGGAAACCAGCTTTGCCAACGCCGGCCAGATCTCGCCCGGCTATG‑‑CCTCGCCCTGGGCTGCGCCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCC > 1:147530/1‑147 CCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGG > 7:163113/1‑116 CCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGG < 8:163113/116‑1 CCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATG > 5:102433/1‑115 CCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATG < 6:102433/115‑1 CTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTC > 1:128418/1‑149 CTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTC > 2:136835/1‑149 CTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACAGCCGGCTGGCGGTCGACCACCGTGACTTC > 2:316828/1‑149 CGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAGGTAGTAGGCACTGGCGGTTCCGAT > 6:110295/1‑148 TCGAAGTCACGGTGGTCGACCGCCAGCCGGCGGTGGCCATGGAAACCAGCTTTGCCAACGCCGGCCAGATCTCGCCCGGCTATG‑‑CCTCGCCCTGGGCTGCGCCTGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6020578‑6020430‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAGGTAGTAGGCACTGGCGGTTCCGAT > NC_002947/6020475‑6020618 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |