New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 818994 | 48 (0.800) | 3 (0.050) | 3/262 | NT | 5.2% | coding (148/627 nt) | PP_0705 | DNA‑3‑methyladenine glycosylase |
? | NC_002947 | = 819030 | 62 (1.050) | coding (184/627 nt) | PP_0705 | DNA‑3‑methyladenine glycosylase |
CATGATGCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCGGCTTTTC > NC_002947/818846‑819142 | cATGATGCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGG > 3:258154‑M1/1‑149 (MQ=255) cATGATGCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGG < 2:275685‑M1/149‑1 (MQ=255) tgCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCgg > 3:220435/1‑149 (MQ=255) tgCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCgg > 2:303579/1‑149 (MQ=255) gCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCggg > 1:140195/1‑149 (MQ=255) ccGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGAtt > 7:205476/1‑149 (MQ=255) cTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCtc > 8:157307/1‑148 (MQ=255) tCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTAc > 3:23816/1‑147 (MQ=255) cTGAGGCCTATCACGAGGCCGCGCAACACCTGTCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCTGGACG‑TGAGCC‑TTATGAGGCATTGGTTCTGGCGATTGCCTACCAGCaa < 6:279459/149‑1 (MQ=255) cTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCaa > 3:272528/1‑149 (MQ=255) ggCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGc < 4:364532/149‑1 (MQ=255) ggCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGc < 8:205476/149‑1 (MQ=255) tATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGc > 2:93125/1‑149 (MQ=255) gCCGCGCAACACCTGGCGGCAATTGACCCGGACTGGTGACGGCATATCTCAGCGATCTGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGTCATTGGcgcgggcgtgcagttgctggtaggcaatcgcccgcaccaa < 7:163800‑M1/149‑41 (MQ=255) ccGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGcgcgggcgtgcagttgctggtaggcaatcgcccgcaccaat < 1:17898‑M1/149‑42 (MQ=255) gcgcAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGcgcgggcgtgcagttgctggtaggcaatcgcccgcaccaatgc < 7:199000‑M1/149‑44 (MQ=255) cgcAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGccgccgtg < 4:258154/149‑3 (MQ=255) gcAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAgg > 2:330429/1‑149 (MQ=255) cTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCt > 4:62879/1‑149 (MQ=255) ggcACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGc < 4:220435/149‑1 (MQ=255) aCTTGACCCGGACTTGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCTCTCGCCGGGACGTTTCTCCATTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGc < 1:303579/149‑1 (MQ=255) cTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGttt < 5:29787/149‑1 (MQ=255) cTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGGGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGttt < 4:23816/149‑1 (MQ=255) gACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCt > 5:213846/1‑149 (MQ=255) gACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCt > 5:285969/1‑149 (MQ=255) aCCCGGACTGGTCACTGCATATCGCCGCGATCGGGCCCTTCCTGCTCCT‑TGCT‑ACCCCGGGACG‑TGAGCC‑TTATGAGGCATTGGGGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCt < 8:231009/148‑1 (MQ=255) cccGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGTACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTgg > 5:34848/1‑149 (MQ=255) ggACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCAc > 1:162892/1‑149 (MQ=255) gACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCAGGGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCAc > 1:82602/1‑149 (MQ=255) gTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACTCCAGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGtt < 6:144228/147‑1 (MQ=255) gTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTcc > 4:136797/1‑149 (MQ=255) tCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTccc > 6:296394/1‑149 (MQ=255) aCGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTAcc > 1:194993/1‑89 (MQ=255) aCGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTAcc < 2:194993/89‑1 (MQ=255) tCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGTTGGCACTGTTCCCGGCAgatgat > 3:349061/1‑149 (MQ=255) aGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTc < 3:62879/149‑1 (MQ=255) cGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTg > 1:197094/1‑122 (MQ=255) cGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTg < 2:197094/122‑1 (MQ=255) cGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTccg > 4:305783/1‑148 (MQ=255) ctgcctgcACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGACTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGATTGCTGGCCCTGTTCCCGGCAGATGATTTTCCCCAGCCagag > 5:44603/1‑148 (MQ=255) gcctgcACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAg > 6:15277/1‑149 (MQ=255) gcACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGc > 8:307479/1‑149 (MQ=255) aCCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTg > 2:144364/1‑149 (MQ=255) cA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGc < 5:231126/149‑1 (MQ=255) cA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGc > 8:165508/1‑149 (MQ=255) ggCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCgg < 1:59178/149‑1 (MQ=255) cGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGAtt > 4:300393/1‑114 (MQ=255) cGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGAtt < 3:300393/114‑1 (MQ=255) tGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAAccc > 7:230089/1‑149 (MQ=255) gCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGGCAGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGc < 4:272528/149‑1 (MQ=255) tGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCt > 7:12980/1‑149 (MQ=255) aGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGc > 2:339227/1‑149 (MQ=255) ggCATTGGTGCGGGCGATTTCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCg > 6:175173/1‑149 (MQ=255) gCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGccaatgcctcataaggctcacgtcccggcgtagcctggtgcaggcagggcccgatcgctgcgatatgccgtgaccagtccgggtcaagtgccgccaggtgttgcgc < 7:199000‑M2/149‑107 (MQ=255) gCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCTCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCgg < 1:93125/149‑1 (MQ=255) cATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCGGc > 6:15811/1‑149 (MQ=255) aTTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGccaatgcctcataaggctcacgtcccggcgtagcctggtgcaggcagggcccgatcgctgcgatatgccgtgaccagtccgggtcaagtgccgccaggtgttgcgcgg < 1:17898‑M2/149‑109 (MQ=255) ttGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGccaatgactcataaggctcacgtcccggcgtagcctggtgcaggcagggccagatcgctgagatatgccgtcaccagtccgggtcaattgccgccaggtgttgcgcggc < 7:163800‑M2/149‑110 (MQ=255) gTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCGGCTTTTc < 2:162892/149‑1 (MQ=255) | CATGATGCTGGCCGACCTTTCGCCTGAGGCCTATCACGAGGCCGCGCAACACCTGGCGGCACTTGACCCGGACTGGTCACGGCATATCGCAGCGATCGGGCCCTGCCTGCACCA‑GGCT‑ACGCCGGGACG‑TGAGCC‑TTATGAGGCATTGGTGCGGGCGATTGCCTACCAGCAACTGCACGCCCGCGCCGCCGAGGCGATCCTGGGGCGTTTGCTGGCACTGTTCCCGGCAGATGATTTTCCCCAGCCAGAGCAGTTGCTGGCGGTATCCCCGGAAACCCTGCGTGCCTGCGGCTTTTC > NC_002947/818846‑819142 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |