| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1531769 | 20 (0.330) | 3 (0.060) | 3/218 | NT | 12.2% | coding (107/630 nt) | PP_1344 | hypothetical protein |
| ? | NC_002947 | = 1531817 | 27 (0.550) | coding (59/630 nt) | PP_1344 | hypothetical protein | |||||
TGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAA > NC_002947/1531622‑1531917 | gggTTCCGCACCCGGCGCAGCGGCCGCCCCTGGCGCAGCCGGGGGGTCGGGGGCGGGGGGGGGGAGGGTTGGTACGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCgggg < 4:356515/148‑1 (MQ=255) gcagGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTc > 7:18707/1‑149 (MQ=255) cggccccgCGGGCGCCCCTGGCGCCGCTGGGCGGACGGGGGGGGGGCGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCt < 4:314053/142‑1 (MQ=38) cGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCGGCCAGGGt > 7:30414/1‑149 (MQ=255) ggggCGCCGCCGGGCGCATGTGGGGTGGGGGGGGGAGGTGTTGGAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTACCATCTCCTTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTAt < 6:86618/147‑1 (MQ=37) tGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCGCCTGCCAGGGTTATGGGGATc > 4:148998/1‑149 (MQ=255) gcagcaGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGGTATCGGTATCTTGt > 7:331022/1‑149 (MQ=255) cgcggggCGGACGGGGGCGGGGCGGGGCCGGGTTTGTAGGCCCGGGGGCCACGCGGGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGGGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAg < 2:217217/145‑1 (MQ=37) gcggttggTGGGGGGGGGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCgg < 6:224818/143‑1 (MQ=39) ggctggtggcTGGGCGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggt < 2:40011‑M1/145‑46 (MQ=255) attgTGGCTGGGTGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTTGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTc < 3:258599/146‑1 (MQ=255) gTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCg > 3:368179/1‑125 (MQ=255) tGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑Acccgcg < 5:81914‑M2/148‑7 (MQ=255) gCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTTTCGGTATCTTGTAGGAGCGGGTTC‑Acccgcgaa < 8:226434‑M2/147‑9 (MQ=255) gTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCTCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑Acccgcgaagaggccggcacagg < 4:114509‑M2/147‑23 (MQ=255) cATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑Ac < 3:261047‑M2/120‑2 (MQ=255) cATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑Ac > 4:261047‑M2/1‑119 (MQ=255) gTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcgggagcgg < 3:149865‑M1/101‑44 (MQ=255) gTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcgggagcgg > 4:149865‑M1/1‑58 (MQ=255) tGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCAAATCCCCGGGGCACCCCCGCCAGCCACGGGTAACGGGTTGGTGTAGGAACGGGTAG‑ACCCGCGAAGACGCCGGCACAGGCAGCCAAAAACAACACAgggtgagga > 2:322009/1‑141 (MQ=255) gTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTCGGAGCGGGTTC‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATa < 8:72249/146‑1 (MQ=255) gTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATa > 7:72249/1‑146 (MQ=255) gCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTG‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCa > 3:300304/1‑149 (MQ=255) ccTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgagaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctac < 4:114509‑M1/147‑126 (MQ=255) ccTGTGCCGGCCTCATAGCGGGGGGACCCGCGCCGGGCAGGGTTTAAGGGTTCTTGGAGGGGCGGGTTC‑ACCCGCGAAGAGGCCCGCCCACGCAGCCAAAGAAAAGACAGGGTCAGCATAGCGTTAAAGTTGGCAAGCCTTGacagaag > 2:331344/1‑143 (MQ=12) ccTGTCGCGGCCTCTTCCCGGGGCAACCCGCTCCTGCCAGGTTTATCGGTATCTTTTAGGAGCGGGTTC‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGTTAGCTTTCATGTTGCCAAGCCTTGAACTCa < 7:333282/148‑1 (MQ=38) tctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCTTCCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGGCAAGCCTTGAACTCAGTGAAAATGccc > 1:293852/1‑149 (MQ=255) tctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGcccc > 4:339576/1‑149 (MQ=255) ttCGCGGGtgaacccgctcctacaagataccgaaaaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctcccccgc < 8:226434‑M1/147‑140 (MQ=255) ttCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTa > 3:146714/1‑149 (MQ=255) cgcgGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctcccccgccca < 5:81914‑M1/148‑143 (MQ=255) cgcgGGGGAACCCGCTCCTGCCAGTTTTATCGGTATCTTGTCGGAGGGGTTTC‑ACCCGGGAAGTGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTAt < 1:322009/148‑1 (MQ=255) gtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatg > 4:261047‑M1/1‑1 (MQ=255) gtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatg < 3:261047‑M1/120‑120 (MQ=255) gggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTaaaa > 3:81451/1‑149 (MQ=255) | TGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTC‑ACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAA > NC_002947/1531622‑1531917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |