New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1855551 =	44 (0.730)	3 (0.050)	3/250	NT	7.1%	coding (563/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	1855629 =	37 (0.650)					coding (641/1341 nt)	PP_1659	hypothetical protein

GTTCATCCAGCCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGG  >  NC_002947/1855405‑1855698                                                                                                                                                   |                                                                                                                                                    gTTCATCCAGCCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGACTGTACAGCAAGGATGGCCAGCAAGCGTTACTGAGCAAgg                                                                                                                                                   >  8:351231/1‑149 (MQ=255)  ttCATCCAGCCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGc                                                                                                                                                  >  6:252463/1‑149 (MQ=255)  ttCATCCAGCCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGc                                                                                                                                                  >  2:335465/1‑149 (MQ=255)    cATCCAGCCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGcc                                                                                                                                                 >  2:332412/1‑148 (MQ=255)     aggcctaccagcccgaccttctgcgcattgcacgactcggggatcaccgcccccttgttcgggtcggcgttgccgggggtgtagaccagcgcgtcgacggcgtggaactcctgcgggttgtcgctgccatcgagcactttccAGGCCGa                                                                                                                                               <  5:66441‑M1/7‑1 (MQ=255)      tCCAGACGTTCAAGACCGGCCCGCTGTTTGACCAAAGCTGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGTCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGAc                                                                                                                                              <  8:171029/149‑1 (MQ=255)       ccAGCCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTGCCTGAGCAAGGCCGAc                                                                                                                                              >  5:366508/1‑148 (MQ=255)        cAGCCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGCCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACaa                                                                                                                                            <  5:186909/149‑1 (MQ=255)          gCCGTTCAAGTCCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAAcc                                                                                                                                          <  3:369469/149‑1 (MQ=255)                 aaGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCg                                                                                                                                    <  6:17971/148‑1 (MQ=255)                 aaGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGc                                                                                                                                   >  4:154550/1‑149 (MQ=255)                   gACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCtt                                                                                                                                 <  3:154550/149‑1 (MQ=255)                   gACCGGCCCGCAGGTTGACCAAACAGGCACGTACACGCGCAACGCGATCATGGTCAACCAGCCCATGTTCGATGACATAGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGCCAACCGCATCGCtt                                                                                                                                 >  6:256523/1‑149 (MQ=255)                        gCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGcc                                                                                                                            >  1:235934/1‑149 (MQ=255)                            gCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCATGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCg                                                                                                                        <  6:254961/149‑1 (MQ=255)                            gCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCg                                                                                                                        <  2:80606/149‑1 (MQ=255)                            gCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCg                                                                                                                        >  8:144661/1‑149 (MQ=255)                                gTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGtt                                                                                                                     <  1:332412/148‑1 (MQ=255)                                gTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTc                                                                                                                    <  1:335465/149‑1 (MQ=255)                                       aaaGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCaa                                                                                                                >  5:191269/1‑146 (MQ=255)                                        aaGCGGCACTTACACGCGCTCGGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGa                                                                                                            <  8:264631/149‑1 (MQ=255)                                                   ccgcccccttgttcgggtcggcgttgccgggggtgtagaccagcgcgtcgacggcgtggaactcctgcgggttgtcgctgccatcgagcactttccAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTc                                                                                                 <  2:35053‑M1/53‑1 (MQ=255)                                                     acGCGCAACGCGATCATTGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCATGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCgg                                                                                               <  1:359359/149‑1 (MQ=255)                                                     acGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCgg                                                                                               >  7:28393/1‑149 (MQ=255)                                                       gcgcAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGgcg                                                                                             <  8:199768/149‑1 (MQ=255)                                                       gcgcAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGgcg                                                                                             >  1:80134/1‑149 (MQ=255)                                                         gcAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGgcgc                                                                                            >  8:272462/1‑148 (MQ=255)                                                             cgcgATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCa                                                                                       <  7:144661/149‑1 (MQ=255)                                                                  tCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGt                                                                                   >  1:105962/1‑148 (MQ=255)                                                                    tcggcgttgccgggggtgtagaccagcgcgtcgacggcgtggaactcctgcgggttgtcgctgccatcgagcactttccAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCaa                                                                                >  1:35053‑M1/80‑149 (MQ=255)                                                                    aTGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCaa                                                                                <  2:80134/149‑1 (MQ=255)                                                                     tGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAg                                                                               <  2:235934/149‑1 (MQ=255)                                                                        tCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCg                                                                            >  7:314379/1‑149 (MQ=255)                                                                             ccgggggtgtagaccagcgcggcgacggcgtggaactcctgcgggttgtcgctgccatcgagcactttccAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCt                                                                        >  7:251981‑M1/71‑148 (MQ=255)                                                                             cAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTg                                                                       >  3:7785/1‑149 (MQ=255)                                                                                 cGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGTAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGaaa                                                                   <  2:74079/149‑1 (MQ=255)                                                                                      ttCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGc                                                               <  7:351231/148‑1 (MQ=255)                                                                                       tCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTc                                                             >  7:74483/1‑149 (MQ=255)                                                                                              cATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATgg                                                        >  3:111881/1‑147 (MQ=255)                                                                                                  gTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGa                                                  <  6:366508/149‑1 (MQ=255)                                                                                                     aacaaTGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACa                                                <  4:7785/148‑1 (MQ=255)                                                                                                          tGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGc                                          <  7:272462/149‑1 (MQ=255)                                                                                                                   cAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTcc                                 <  5:252463/149‑1 (MQ=255)                                                                                                                    aGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGt                                    <  1:323710/145‑1 (MQ=255)                                                                                                                    aGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGt                                    >  2:323710/1‑145 (MQ=255)                                                                                                                     gCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCAc                               <  5:256523/149‑1 (MQ=255)                                                                                                                               caaGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACACAGCAGGTCGGCGCGAGCATGGTCAAGTCGTCCAGGAAAGTGCACGATGGCAGCGCCAACCCGCAGGAGATCCACGCCGTCGCcg                     >  4:271159/3‑149 (MQ=255)                                                                                                                                  gCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCTCCTGCGGTTCGCAAAAGACCCAGCAGGGCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACgcgc                  <  6:191269/149‑1 (MQ=255)                                                                                                                                    aaGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCATCAGGTCGGCGCTATCATGGTCAAGTCGGCCTTGAAAGTGCTCGATGGCATCGACAACCCGCAGGAGTTCCACGCCTTCGACGCGCTg                <  2:105962/149‑1 (MQ=255)                                                                                                                                          tCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTa           >  6:66441/1‑148 (MQ=255)                                                                                                                                           ccTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGGCCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTc                                                             <  5:89106/97‑1 (MQ=255)                                                                                                                                           ccTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGGCCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTc                                                             >  6:89106/1‑97 (MQ=255)                                                                                                                                                  aaGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCgg  >  5:106895/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTTCATCCAGCCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGG  >  NC_002947/1855405‑1855698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.