New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1855551 =	44 (0.730)	3 (0.050)	3/250	NT	7.1%	coding (563/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	1855629 =	37 (0.650)					coding (641/1341 nt)	PP_1659	hypothetical protein

CAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCT  >  NC_002947/1855481‑1855770                                                                                                                                                     |                                                                                                                                              cAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTg                                                                                                                                               >  3:7785/1‑149 (MQ=255)     cGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGTAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGaaa                                                                                                                                           <  2:74079/149‑1 (MQ=255)          ttCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGc                                                                                                                                       <  7:351231/148‑1 (MQ=255)           tCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTc                                                                                                                                     >  7:74483/1‑149 (MQ=255)                  cATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATgg                                                                                                                                >  3:111881/1‑147 (MQ=255)                      gTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGa                                                                                                                          <  6:366508/149‑1 (MQ=255)                         aacaaTGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACa                                                                                                                        <  4:7785/148‑1 (MQ=255)                              tGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGc                                                                                                                  <  7:272462/149‑1 (MQ=255)                                       cAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTcc                                                                                                         <  5:252463/149‑1 (MQ=255)                                        aGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGt                                                                                                            <  1:323710/145‑1 (MQ=255)                                        aGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGt                                                                                                            >  2:323710/1‑145 (MQ=255)                                         gCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCAc                                                                                                       <  5:256523/149‑1 (MQ=255)                                                   caaGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACACAGCAGGTCGGCGCGAGCATGGTCAAGTCGTCCAGGAAAGTGCACGATGGCAGCGCCAACCCGCAGGAGATCCACGCCGTCGCcg                                                                                             >  4:271159/3‑149 (MQ=255)                                                      gCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCTCCTGCGGTTCGCAAAAGACCCAGCAGGGCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACgcgc                                                                                          <  6:191269/149‑1 (MQ=255)                                                        aaGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCATCAGGTCGGCGCTATCATGGTCAAGTCGGCCTTGAAAGTGCTCGATGGCATCGACAACCCGCAGGAGTTCCACGCCTTCGACGCGCTg                                                                                        <  2:105962/149‑1 (MQ=255)                                                              tCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTa                                                                                   >  6:66441/1‑148 (MQ=255)                                                               ccTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGGCCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTc                                                                                                                                     >  6:89106/1‑97 (MQ=255)                                                               ccTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGGCCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTc                                                                                                                                     <  5:89106/97‑1 (MQ=255)                                                                      aaGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCgg                                                                          >  5:106895/1‑149 (MQ=255)                                                                       aggccgacttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggcctGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGCCGCGCTGGTCTACACCCCCgg                                                                          >  7:251981‑M2/79‑148 (MQ=255)                                                                        GGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGc                                                                         <  6:99695‑M1/148‑1 (MQ=255)                                                                        GGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGc                                                                         <  2:221818‑M1/148‑1 (MQ=255)                                                                           CGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCggcaccg                                                                     <  1:23306‑M1/149‑4 (MQ=255)                                                                               ttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggcctGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGa                                                                 >  1:35053‑M2/71‑149 (MQ=255)                                                                                  cGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGAccc                                                              >  5:382988/1‑149 (MQ=255)                                                                                    cATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCg                                                             >  6:257194/1‑148 (MQ=255)                                                                                            tCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAgg                                                      <  4:111881/147‑1 (MQ=255)                                                                                                gacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggcctGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCgg                                                <  2:35053‑M2/96‑1 (MQ=255)                                                                                                cTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCgg                                                <  8:314379/149‑1 (MQ=255)                                                                                                      ttCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATcc                                          <  8:74483/149‑1 (MQ=255)                                                                                                         gCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGTCGACCCGAGCACGGGGGCGGTGATCCCCg                                       >  2:322534/1‑149 (MQ=255)                                                                                                         gCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATcccc                                        >  4:240172/1‑148 (MQ=255)                                                                                                          cAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTacac                                                                                >  5:326319/1‑107 (MQ=255)                                                                                                          cAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTacac                                                                                <  6:326319/107‑1 (MQ=255)                                                                                                          cAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTacac                                                                                <  6:320300/107‑1 (MQ=255)                                                                                                          cAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTacac                                                                                >  5:320300/1‑107 (MQ=255)                                                                                                           aaaaGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAg                                     >  5:209619/1‑149 (MQ=255)                                                                                                           aaaaGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAg                                     >  5:134436/1‑149 (MQ=255)                                                                                                                actcagcagGGCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGAAGAGACAACCCGCAGGAGTTCCACGCGGTCGTCGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTg                                <  3:271159/146‑1 (MQ=255)                                                                                                                aCCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTg                                <  6:209619/149‑1 (MQ=255)                                                                                                                    agcagGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAAt                            <  5:99695/149‑1 (MQ=255)                                                                                                                       agGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATgcg                         <  5:257194/149‑1 (MQ=255)                                                                                                                                cgATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTc                >  2:214943/1‑149 (MQ=255)                                                                                                                                 gATCATGGTCAAGTCGGCCTGGAAAGTGCTCAATGGCAGCGACAACCCGCAGGAGTTACACGCCGTCGACGCGCTGGTATACACACCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGATTCGTGCAATGCGCAGAAGGTCg               >  1:227443/1‑149 (MQ=255)                                                                                                                                  aTCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCgg              >  5:10756/1‑149 (MQ=255)                                                                                                                                         tCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCg               >  4:22052/1‑141 (MQ=255)                                                                                                                                         tCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCg               <  3:22052/141‑1 (MQ=255)                                                                                                                                         tCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTgg         >  6:154422/1‑147 (MQ=255)                                                                                                                                           aaGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAgg     >  6:356396/1‑149 (MQ=255)                                                                                                                                           aaGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAg      <  6:382988/148‑1 (MQ=255)                                                                                                                                            aGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGc    <  5:154422/149‑1 (MQ=255)                                                                                                                                              tcggcctGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCt  <  5:66441‑M2/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCT  >  NC_002947/1855481‑1855770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.