New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2303706 =	39 (0.650)	3 (0.050)	3/254	NT	6.5%	coding (1136/1632 nt)	PP_2027	hypothetical protein
	?	NC_002947	2303772 =	49 (0.850)					coding (1070/1632 nt)	PP_2027	hypothetical protein

CCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGTTCGCTGATTTCG  >  NC_002947/2303558‑2303852                                                                                                                                                     |                                                                                                                                                    tgccgccgctgccggctacggagatcatcggcctgcgccgttaccctgaccagccgctgctgcgcaacgaaatcagcgaacggggcatgaccgccgaccgcgaagagcgcgaggccctggtgccgacccacagcggcacgctggcgttg                                                                                                                                                     <  6:22380‑M1/1‑1 (MQ=255)  caccacAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTgcgcgc                                                                                                                                                    >  6:9636/1‑149 (MQ=255)   ccgccgctgccggctacggagatcatcggcctgcgccgttaccctgaccagccgctgctgcgcaacgaaatcagcgaacggggcatgaccgccaaccgcgaagagcgcgaggccctggtgccgacccacagcggcacgctggcgttg                                                                                                                                                     >  6:195890‑M1/147‑147 (MQ=255)   ccgccgctgccggctacggagatcatcggcctgcgccgttaccctgaccagccgctgctgcgcaacgaaatcagcgaacggggcatgaccgccaaccgcgaagagcgcgaggccctggtgccgacccacagcggcacgctggcgttg                                                                                                                                                     >  4:356958‑M1/147‑147 (MQ=255)     gccgctgccggctacggagatcatcggcctgcgccgttaccctgaccagccgctgctgcgcaacgaaatcagcgaacggggcatgaccgccaaccgcgaagagcgcgaggccctggtgccgacccacagcggcacgctggcgttGCCgg                                                                                                                                                 >  3:296788‑M1/145‑149 (MQ=255)      acaGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCgg                                                                                                                                                 >  2:292615/1‑148 (MQ=255)      acaGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGc                                                                                                                                                >  4:189593/1‑149 (MQ=255)       caGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGACgg                                                                                                                                                 >  5:254551/1‑147 (MQ=255)              aaGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGgctgct                                                                                                                                        <  8:8565/149‑1 (MQ=255)              aaGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGgctgct                                                                                                                                        <  2:22279/149‑1 (MQ=255)                   cAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCt                                                                                                                                   >  6:325132/1‑149 (MQ=255)                                 gggCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTcg                                                                                                                    >  5:367691/1‑149 (MQ=255)                                    cAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCgg                                                                                                                 >  8:225136/1‑149 (MQ=255)                                       acacCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGgtg                                                                                                              >  7:212096/1‑149 (MQ=255)                                       acacCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGgtg                                                                                                              <  6:254551/149‑1 (MQ=255)                                        cacCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGgtgt                                                                                                             <  5:9636/149‑1 (MQ=255)                                           cAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTc                                                                                                           >  2:208843/1‑148 (MQ=255)                                             cctgaccagccgctgctgcgcaacgaaatcagcgaacggggcatgaccgccaaccgcgaagagcgcgaggccctggtgccgacccacagcggcacgctggcgttGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTccac                                                                                                        <  3:151346‑M1/45‑1 (MQ=255)                                                tgGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAg                                                                                                     <  5:325132/149‑1 (MQ=255)                                                  gACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTc                                                                                                           <  1:128084/141‑1 (MQ=255)                                                  gACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTc                                                                                                           >  2:128084/1‑141 (MQ=255)                                                          ccAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTc                                                                                             >  1:132159/1‑147 (MQ=255)                                                          ccAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTc                                                                                             <  1:208843/147‑1 (MQ=255)                                                           cAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAg                                                                                          >  2:188667/1‑149 (MQ=255)                                                              ggCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAgcgc                                                                                       <  8:212096/149‑1 (MQ=255)                                                                     gaaatcagcgaacggggcatgaccgccaaccgcgaagagcgcgaggccctggtgccgacccacagcggcacgctggcgttGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAAc                                                                                >  4:151346‑M1/81‑149 (MQ=255)                                                                             cgggCGCTGCTGTTGGCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGt                                                                        <  6:262516/147‑1 (MQ=255)                                                                                      ctgTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTGTTCGCGGGTGTTGCGCCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGGCGCggtg                                                               >  6:310783/1‑149 (MQ=255)                                                                                                ccACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCAcc                                                     >  3:113983/1‑149 (MQ=255)                                                                                                 cACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCAc                                                      >  1:297196/1‑147 (MQ=255)                                                                                                  aCCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAg                                                   >  7:256844/1‑149 (MQ=255)                                                                                                    cGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAggg                                                 >  4:91563/1‑149 (MQ=255)                                                                                                         tgtCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTcg                                            <  8:256844/149‑1 (MQ=255)                                                                                                            cgcgaggccctggtgccgacccacagcggcacgctggcgttGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCaa                                                                                 >  8:178818‑M1/42‑109 (MQ=255)                                                                                                              gcgcTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGctc                                       >  5:305019/1‑149 (MQ=255)                                                                                                                     gTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCgg                                <  1:188667/149‑1 (MQ=255)                                                                                                                           ggTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCg                          >  4:41244/1‑149 (MQ=255)                                                                                                                           ggTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCg                          <  2:132159/149‑1 (MQ=255)                                                                                                                                  cAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATg                    <  1:292615/148‑1 (MQ=255)                                                                                                                                  cAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGc                   <  6:367691/149‑1 (MQ=255)                                                                                                                                  cAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGc                   >  7:316957/1‑149 (MQ=255)                                                                                                                                  cAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGc                   <  3:41244/149‑1 (MQ=255)                                                                                                                                  cAGCACGTTCAGCGGGCGCGACGGCAGGCTGCTGTGCG‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCTCTCTTCGCTGTTGGCGGTCATg                    <  3:189593/148‑1 (MQ=255)                                                                                                                                        gTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCTGCCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGt              >  1:234077/1‑149 (MQ=255)                                                                                                                                        gTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGtt             >  7:302163/1‑149 (MQ=255)                                                                                                                                          tCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCTGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGTTCg           >  2:349658/1‑149 (MQ=255)                                                                                                                                          tCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGTTCg           >  7:104607/1‑149 (MQ=255)                                                                                                                                            aGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCTACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGTTCGc          <  8:191981/148‑1 (MQ=255)                                                                                                                                             gCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACGAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGTTCGCt         >  5:259691/1‑148 (MQ=255)                                                                                                                                                   gcgcCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGTTCGCTGATTTCg  >  2:338014/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCAGCGTGCGCGCCGGCAGGCTGCTGTGCT‑CCAGGTGGTCTTCGCGGGTGTTCCACCAGGCCACTTCCAGCGCCGGCAACGCCAGCGTGCCGCTGTGGGTCGGCACCAGGGCCTCGCGCTCTTCGCGGTTGGCGGTCATGCCCCGTTCGCTGATTTCG  >  NC_002947/2303558‑2303852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.