New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2669969 =49 (0.810)3 (0.050) 3/258 NT 6.4% coding (2349/2610 nt) acnB aconitate hydratase B
?NC_002947 2670006 = 40 (0.690)coding (2312/2610 nt) acnB aconitate hydratase B

CTGCATGTACTCTTCGACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAA  >  NC_002947/2669825‑2670117
                                                                                                                                                |                                                                                                                                                      
cTGCATGTACTCTTCGACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGc                                                                                                                                                     <  3:144551/148‑1 (MQ=255)
cTGCATGTACTCTTCGACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCa                                                                                                                                                    <  1:226744/149‑1 (MQ=255)
            ttCGACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGGGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGt                                                                                                                                      >  8:86558/1‑149 (MQ=255)
            ttCGACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTg                                                                                                                                        <  1:179354/147‑1 (MQ=255)
            ttCGACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGt                                                                                                                                      >  4:336076/1‑149 (MQ=255)
               gACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGc                                                                                                                                   >  4:127282/1‑149 (MQ=255)
               gACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGGTACCGGTCGAGGTGGAGACCACGGTCGACCCGGTCTGCACGCGTGCCAGGTTGc                                                                                                                                   >  3:59241/1‑149 (MQ=255)
                      ggCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGACCAGACGGTTCGGGAAGTTACGTGTCGAGGTGGAGACAACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGca                                                                                                                            >  2:103889/1‑149 (MQ=255)
                             tGCCGATGATCGTCGCGACAGCGGCCAGCTCGGCCGATGCCTGGTACACGGTGGTCGCGTCGCCCAGACGGTGCGGGAAGTTCCGGGTCGAGGGGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGa                                                                                                                      <  4:59241/148‑1 (MQ=255)
                              gCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGag                                                                                                                     <  7:68985/148‑1 (MQ=255)
                               ccGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGagca                                                                                                                   <  1:320959/149‑1 (MQ=255)
                                cGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGagcag                                                                                                                  <  3:336076/149‑1 (MQ=255)
                                 gatgatCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGccc                                                                                                                                 >  5:85358/1‑133 (MQ=255)
                                 gatgatCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGccc                                                                                                                                 <  6:85358/133‑1 (MQ=255)
                                 gatgatCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGagcagc                                                                                                                 >  1:36043/1‑149 (MQ=255)
                                      tCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCTCATGCACAGCGAGCAGCCTgg                                                                                                             <  3:127282/148‑1 (MQ=255)
                                      tCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTgg                                                                                                             >  5:31203/1‑148 (MQ=255)
                                      tCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGc                                                                                                            <  2:36043/149‑1 (MQ=255)
                                        gAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCAt                                                                                                          >  2:219344/1‑149 (MQ=255)
                                           gCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTc                                                                                                       <  5:324909/149‑1 (MQ=255)
                                             gACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCa                                                                                                     >  5:70761/1‑149 (MQ=255)
                                               cAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATa                                                                                                   <  3:44871/149‑1 (MQ=255)
                                                  cGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATAc                                                                                                  >  7:303151/1‑147 (MQ=255)
                                                  cGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATAc                                                                                                  <  8:303151/147‑1 (MQ=255)
                                                         gccaaccaagatggacgctcaccagctgaccgaagaaggctactacggcatctacggcaaggccggtgcacgtatggaaatgccaggCTGCACGCGTGCCTGGTTGCCCATGCACAGCGagcag                                                                                                                  >  7:123341‑M1/88‑124 (MQ=255)
                                                         gccaaccaagatggacgctcaccagctgaccgaagaaggctactacggcatctacggcaaggccggtgcacgtatggaaatgccaggCTGCACGCGTGCCTGGTTGCCCATGCACAGCGagcag                                                                                                                  <  8:123341‑M1/37‑1 (MQ=255)
                                                            ggCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACCGCGTGCCTGGTTGCCCATGCACAGc                                                                                                                        <  1:3764/116‑1 (MQ=255)
                                                            ggCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGc                                                                                                                        >  2:3764/1‑115 (MQ=255)
                                                             gCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCtt                                                                                     <  6:70761/149‑1 (MQ=255)
                                                             gCCGATGCCAGGTACACGTTGGTCGCATCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCtt                                                                                     >  6:183042/1‑149 (MQ=255)
                                                                     cAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGa                                                                             <  1:219344/149‑1 (MQ=255)
                                                                           cacGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCgt                                                                       <  5:200033/149‑1 (MQ=255)
                                                                           cacGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCg                                                                        <  8:176544/148‑1 (MQ=255)
                                                                                   tcgcgtcgcCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCct                                                               >  5:256566/1‑149 (MQ=255)
                                                                                       gtcgcCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCcttctt                                                           >  5:237233/1‑149 (MQ=255)
                                                                                                aCGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTAGGTCAGCt                                                  >  6:298759/1‑149 (MQ=255)
                                                                                                 cGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTg                                                 <  6:31203/149‑1 (MQ=255)
                                                                                                  ggTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTgg                                                >  1:300738/1‑149 (MQ=255)
                                                                                                    ttCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTg                                              <  6:237233/149‑1 (MQ=255)
                                                                                                      cGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGa                                             <  5:183042/148‑1 (MQ=255)
                                                                                                       gggAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGTACCGGCCTTGCCGTAg                                                                              <  8:9776/114‑1 (MQ=255)
                                                                                                       gggAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGTACCGGCCTTGCCGTAg                                                                              >  7:9776/1‑114 (MQ=255)
                                                                                                       gggAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGc                                           >  7:130436/1‑149 (MQ=255)
                                                                                                            ctacggcaaggccggtgcacgtatggaaatgccaggCTGCTCGCTGTGCATGGGCAACCAGGCACGCGTGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCa                                      <  7:61782‑M1/113‑1 (MQ=255)
                                                                                                              tACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCgtagt                                                                    >  6:161983/1‑117 (MQ=255)
                                                                                                              tACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCgtagt                                                                    <  5:161983/117‑1 (MQ=255)
                                                                                                                 gggTCGAGGTGGATACCACGGTCGAACCTGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGTCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCttg                                 <  1:103889/149‑1 (MQ=255)
                                                                                                                  ggTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCttgg                                <  6:85434/149‑1 (MQ=255)
                                                                                                                          tGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGa                        <  2:300738/149‑1 (MQ=255)
                                                                                                                                 cACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGa                        <  4:274854/142‑1 (MQ=255)
                                                                                                                                 cACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGa                        >  3:274854/1‑142 (MQ=255)
                                                                                                                                  aCGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAgccagcca                >  7:287750/1‑149 (MQ=255)
                                                                                                                                        gAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCTGAGCCAGCCAAAGACg          >  8:154553/1‑149 (MQ=255)
                                                                                                                                          aCCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACggg        >  1:263283/1‑149 (MQ=255)
                                                                                                                                            cGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTc      <  8:264484/149‑1 (MQ=255)
                                                                                                                                            cGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTc      >  6:356061/1‑149 (MQ=255)
                                                                                                                                              gTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCg     >  3:13301/1‑148 (MQ=255)
                                                                                                                                                CTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGaa  >  8:287750‑M1/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                      
CTGCATGTACTCTTCGACGGTCGGCAGTTTGCCGATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAA  >  NC_002947/2669825‑2670117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.