New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2669969 =	49 (0.810)	3 (0.050)	3/258	NT	6.4%	coding (2349/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	2670006 =	40 (0.690)					coding (2312/2610 nt)	acnB	aconitate hydratase B

GATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCAGCA  >  NC_002947/2669858‑2670141                                                                                                                                                      |                                                                                                                                        gatgatCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGagcagc                                                                                                                                         >  1:36043/1‑149 (MQ=255)      tCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCTCATGCACAGCGAGCAGCCTgg                                                                                                                                     <  3:127282/148‑1 (MQ=255)      tCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTgg                                                                                                                                     >  5:31203/1‑148 (MQ=255)      tCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGc                                                                                                                                    <  2:36043/149‑1 (MQ=255)        gAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCAt                                                                                                                                  >  2:219344/1‑149 (MQ=255)           gCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTc                                                                                                                               <  5:324909/149‑1 (MQ=255)             gACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCa                                                                                                                             >  5:70761/1‑149 (MQ=255)               cAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATa                                                                                                                           <  3:44871/149‑1 (MQ=255)                  cGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATAc                                                                                                                          <  8:303151/147‑1 (MQ=255)                  cGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATAc                                                                                                                          >  7:303151/1‑147 (MQ=255)                             gCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCtt                                                                                                             <  6:70761/149‑1 (MQ=255)                             gCCGATGCCAGGTACACGTTGGTCGCATCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCtt                                                                                                             >  6:183042/1‑149 (MQ=255)                                     tggacgctcaccagctgaccgaagaaggctactacggcatctacggcaaggccggtgcacgtatggaaatgccaggctgcacgcgtgcctggttgcccatgcacagcgagcagCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAg                                                                                                      <  7:61782‑M2/36‑1 (MQ=255)                                     cAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGa                                                                                                     <  1:219344/149‑1 (MQ=255)                                           cacGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCgt                                                                                               <  5:200033/149‑1 (MQ=255)                                           cacGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCg                                                                                                <  8:176544/148‑1 (MQ=255)                                                   tcgcgtcgcCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCct                                                                                       >  5:256566/1‑149 (MQ=255)                                                       gtcgcCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCcttctt                                                                                   >  5:237233/1‑149 (MQ=255)                                                                aCGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTAGGTCAGCt                                                                          >  6:298759/1‑149 (MQ=255)                                                                 cGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTg                                                                         <  6:31203/149‑1 (MQ=255)                                                                  ggTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTgg                                                                        >  1:300738/1‑149 (MQ=255)                                                                    ttCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTg                                                                      <  6:237233/149‑1 (MQ=255)                                                                      cGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGa                                                                     <  5:183042/148‑1 (MQ=255)                                                                       gggAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGTACCGGCCTTGCCGTAg                                                                                                      <  8:9776/114‑1 (MQ=255)                                                                       gggAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGTACCGGCCTTGCCGTAg                                                                                                      >  7:9776/1‑114 (MQ=255)                                                                       gggAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGc                                                                   >  7:130436/1‑149 (MQ=255)                                                                            ctacggcaaggccggtgcacgtatggaaatgccaggCTGCTCGCTGTGCATGGGCAACCAGGCAC‑GCGTGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCa                                                              <  7:61782‑M1/113‑1 (MQ=255)                                                                              tACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCgtagt                                                                                            >  6:161983/1‑117 (MQ=255)                                                                              tACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCgtagt                                                                                            <  5:161983/117‑1 (MQ=255)                                                                                 gggTCGAGGTGGATACCACGGTCGAACCTGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGTCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCttg                                                         <  1:103889/149‑1 (MQ=255)                                                                                  ggTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCttgg                                                        <  6:85434/149‑1 (MQ=255)                                                                                          tGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGa                                                <  2:300738/149‑1 (MQ=255)                                                                                                 cACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGa                                                <  4:274854/142‑1 (MQ=255)                                                                                                 cACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGa                                                >  3:274854/1‑142 (MQ=255)                                                                                                  aCGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAgccagcca                                        >  7:287750/1‑149 (MQ=255)                                                                                                        gAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCTGAGCCAGCCAAAGACg                                  >  8:154553/1‑149 (MQ=255)                                                                                                          aCCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACggg                                >  1:263283/1‑149 (MQ=255)                                                                                                            cGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTc                              >  6:356061/1‑149 (MQ=255)                                                                                                            cGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTc                              <  8:264484/149‑1 (MQ=255)                                                                                                              gTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCg                             >  3:13301/1‑148 (MQ=255)                                                                                                                CTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGaa                          >  8:287750‑M1/1‑149 (MQ=255)                                                                                                                 ctgctcgctgtgcatgggcaaccaggcacgcgtgcagCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGc                                                   <  8:123341‑M2/87‑1 (MQ=255)                                                                                                                 ctgctcgctgtgcatgggcaaccaggcacgcgtgcagCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGc                                                   >  7:123341‑M2/38‑124 (MQ=255)                                                                                                                    aCGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCGACAGACGGGTCGGAATGc                       >  7:254913/1‑148 (MQ=255)                                                                                                                      gc‑gTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCAc                    <  7:86558/149‑1 (MQ=255)                                                                                                                              tGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACTGGTCGGAATGCCACCCTTGag             >  5:306579/1‑148 (MQ=255)                                                                                                                                gTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGCCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGATCGTCCATCTTGGTTGGAGTAGCCATCCACAGACTGGTCGGAATGCCACCCTTGACCt           <  4:100860/149‑1 (MQ=255)                                                                                                                                          cacaGCGAGCAGCCTGGCATTTCCATAGGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCcatca  <  8:130436/148‑1 (MQ=255)                                                                                                                                             ggCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCtt                <  5:377383/130‑1 (MQ=255)                                                                                                                                             ggCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCtt                >  6:377383/2‑131 (MQ=255)                                                                                                                                                      |                                                                                                                                        GATGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGC‑GTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCAGCA  >  NC_002947/2669858‑2670141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.