New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3524566 =	NA (NA)	3 (0.050)	3/254	NT	NA	coding (1279/1533 nt)	PP_3114	transposase
	?	NC_002947	3524616 =	NA (NA)					coding (1329/1533 nt)	PP_3114	transposase

CCATTGCTGACTCAGCTGAAAAACTGGGTAGAGAAAACGCAACCTCAGGTCACGACGCAGAATGCCTTGGGCAAGGCCATCGGTTACTTGGCCAGCAACTGGAGCAAATTGGAACGCTACGTCGAGCACGGCTACTTGCCGATGGACAACAACGCGGCCGAGCGT  >  NC_002947/3524428‑3524592                                                                                                                                           |                           cccttGCTGACTCAGCTGAAAAACTGGCTAGAGAAAACGCAACCTCAGGTCACGAGGCAGAATGCCTTGGGCAAGGCCATCGGTTACTTGGCCAGCAACTGGAGCAAATTGGAACGCTCCGTCGAGCACGGCTACTTGCCGATGGac                    <  8:149688/144‑1 (MQ=0)                 tgtaaaaGTGGGTAGAGATAACGCAACGTCAGGTCAAGAGTCAGAATGCCTTGGGCAAGGCCATCGGTTACTTGGCCAGCAACTGGAGCAAATTGGAACGCTACTTCGAGCACGGCTACTTGCCGATGGACAACAACGCGGCCGAGCGt  <  3:286373/146‑1 (MQ=1)                                                                                                                                           |                           CCATTGCTGACTCAGCTGAAAAACTGGGTAGAGAAAACGCAACCTCAGGTCACGACGCAGAATGCCTTGGGCAAGGCCATCGGTTACTTGGCCAGCAACTGGAGCAAATTGGAACGCTACGTCGAGCACGGCTACTTGCCGATGGACAACAACGCGGCCGAGCGT  >  NC_002947/3524428‑3524592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.