New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4586034 =	16 (0.270)	5 (0.100)	5/222	NT	33.0%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	7 (0.140)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

CGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GG‑TAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCT  >  NC_002947/4585889‑4586172                                                                                                                                                    |                                                                                                                                              aaggtgccgcggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgg                                                                                                                                               >  7:215589‑M1/148‑148 (MQ=255) aaggtgccgcggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgg                                                                                                                                               >  5:306128‑M1/148‑148 (MQ=255)  aggtgccgcggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcggg                                                                                                                                              <  5:364800‑M1/2‑1 (MQ=255)  aggtgccgcggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑t                                                                                                                                            >  1:272108‑M1/147‑149 (MQ=255)  aggtgccgcggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑t                                                                                                                                            >  7:5706‑M1/147‑149 (MQ=255)          cggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatccgtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGc                                                                                                                                    >  1:227891‑M1/139‑149 (MQ=255)                 tacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGCTCCTAc                                                                                                                              >  3:160681‑M1/132‑148 (MQ=255)                    gttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGCTCCTACCAgg                                                                                                                          <  6:266261‑M1/21‑1 (MQ=255)                     ttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGCTCCTACCAggg                                                                                                                         >  4:259417‑M1/128‑149 (MQ=255)                                       gatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGc                                                                                                                                    >  4:5429‑M1/110‑120 (MQ=255)                                       gatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGc                                                                                                                                    <  3:5429‑M1/11‑1 (MQ=255)                                       aCGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATg                                                                                                     >  7:274807/1‑149 (MQ=39)                                        cGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATgc                                                                                                    <  6:2032/149‑1 (MQ=39)                                         ggCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATgcg                                                                                                   <  5:385823/149‑1 (MQ=39)                                          gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATgcgg                                                                                                  <  8:274807/149‑1 (MQ=39)                                          gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATgcgg                                                                                                  <  5:244508/149‑1 (MQ=39)                                                      caaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTg                                                                                       >  5:243003‑M1/95‑149 (MQ=255)                                                      aCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTgg                                                                                      <  1:89105/149‑1 (MQ=39)                                                         ggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTa                                                                                    >  7:207330‑M1/92‑149 (MQ=255)                                                         gCTGATCTGCGCTGCTCCATTGACAGGTTGAGGATGACCGGGGGCTT‑GGCAAGGTGAAGATCTTGCATTGCTCGGGCCGGCCGCTTCGCGGG‑TACACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg                                                                                   <  3:249431/149‑1 (MQ=255)                                                         gCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg                                                                                   <  4:147157/149‑1 (MQ=39)                                                           tgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTgg                                                                                      <  4:209498‑M1/56‑1 (MQ=255)                                                           tgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGG‑TAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTgg                                                                                      >  3:209498‑M1/90‑145 (MQ=255)                                                             aTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGa                                                                                 <  1:236007/147‑1 (MQ=39)                                                                  cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGtt                                                                          >  2:139983/1‑149 (MQ=38)                                                                    ctgctCCATTGAAAGGTTGAGGAAGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCTTTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTa                                                                        <  7:251884/149‑1 (MQ=38)                                                                       ctCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAc                                                                       <  1:139983/147‑1 (MQ=38)                                                                          cATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCcgc                                                                   >  7:28983/1‑148 (MQ=38)                                                                               aaaGGTGGAGTATCACCGGG‑GCTTGGGCAAGGTTAAGATGTTGAATTGATCGGGCCGGCCTCTTCGCGGG‑AAAACCCGCTCCTACCCGGGACC‑GGGCCGGCTTTTAATGCGGCGCTGCCCCTGGTTGGAGCGGTTTTACCCGCGAaga                                                              <  8:28983/148‑1 (MQ=255)                                                                                  ggTTGAGGATGCCCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCCGGGA‑CCGGGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggcc                                                          >  2:47261‑M2/1‑142 (MQ=255)                                                                                                      tt‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCt                                                                                        <  2:184932/99‑1 (MQ=25)                                                                                                      tt‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCt                                                                                        >  1:184932/1‑99 (MQ=25)                                                                                                                                           ctcttcgcgGG‑TAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACACGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCCCCCTGAtct  <  7:238018‑M1/140‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              CGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GG‑TAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCT  >  NC_002947/4585889‑4586172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.