New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4586034 =	16 (0.270)	5 (0.100)	5/222	NT	33.0%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	7 (0.140)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

CATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GG‑TAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTG  >  NC_002947/4585962‑4586252                                                                                                                                                     |                                                                                                                                                    cATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGG‑TAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCcgc                                                                                                                                                   >  7:28983/1‑148 (MQ=38)      aaaGGTGGAGTATCACCGGG‑GCTTGGGCAAGGTTAAGATGTTGAATTGATCGGGCCGGCCTCTTCGCGGG‑AAAACCCGCTCCTACCCGGGACC‑GGGCCGGCTTTTAATGCGGCGCTGCCCCTGGTTGGAGCGGTTTTACCCGCGAaga                                                                                                                                              <  8:28983/148‑1 (MQ=255)         ggTTGAGGATGCCCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCCGGGA‑CCGGGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggcc                                                                                                                                          >  2:47261‑M2/1‑142 (MQ=255)         agatcaggggggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgtgtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAagag                                                                                                                                             <  7:238018‑M2/9‑1 (MQ=255)                                                                  ctcttcgcgGG‑TAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACACGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCCCCCTGAtct                                                                                  <  7:238018‑M1/140‑1 (MQ=255)                                                                                AACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGAGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTACGCCACACTGATCTCACGCATGCGGaa                                                                     <  5:266261‑M1/149‑1 (MQ=255)                                                                                         cTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagc                                                            <  8:129052‑M2/149‑86 (MQ=255)                                                                                          tACCAGGGA‑CCGTTCCGGCCTTTAATGCGCCGCTGCACCTGTTAGTAGCGGTTTAACCCGCTAagaggccgtcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagct                                                           >  1:285616‑M2/1‑63 (MQ=255)                                                                                          tACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagct                                                           <  7:201363‑M2/149‑87 (MQ=255)                                                                                          tACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagct                                                           <  5:107995‑M2/149‑87 (MQ=255)                                                                                           taccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCAcc                                                           >  7:207330‑M2/59‑149 (MQ=255)                                                                                           aCCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctg                                                          <  1:57906‑M2/149‑88 (MQ=255)                                                                                             ccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCa                                                             >  3:209498‑M2/57‑145 (MQ=255)                                                                                             ccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCa                                                             <  4:209498‑M2/89‑1 (MQ=255)                                                                                             cAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgtt                                                        <  3:86669‑M2/149‑90 (MQ=255)                                                                                             CAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTg                                                               >  2:133346‑M1/1‑142 (MQ=255)                                                                                             CAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGACGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTg                                                               <  1:133346‑M1/142‑1 (MQ=255)                                                                                              caggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTg                                                        >  5:243003‑M2/56‑149 (MQ=255)                                                                                                ggacc‑gtgcCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcac                                                     <  8:244128‑M2/145‑93 (MQ=255)                                                                                                ggacc‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGCTCTCACGCATGCGGAGCTGCTGCACCTTGCcg                                                     >  6:343117/5‑149 (MQ=255)                                                                                                  acc‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggt                                                   >  6:364800/3‑149 (MQ=255)                                                                                                       tGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggtcacg                                               <  4:314173/149‑1 (MQ=255)                                                                                                       tGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggtcacg                                               >  3:314173/1‑149 (MQ=255)                                                                                                              cTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggacggcccgatcaatgcaagatcttcaccttgccaagcagccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtgg                                        >  8:201363‑M2/1‑44 (MQ=255)                                                                                                               tcaaggccggcacggtcccTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtgg                                        <  5:275542‑M2/141‑106 (MQ=255)                                                                                                                 aaggccggcacggtcCCTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtc                                      <  2:218885‑M2/143‑108 (MQ=255)                                                                                                                  actGCGCCGCGGCCCCTGGAAGGAGCGGGTTAACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGt                                     <  8:238018/146‑1 (MQ=255)                                                                                                                  aaTGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCAACTTGCCGGTCACGGTCATCGGGTa                                    >  5:104140/1‑149 (MQ=255)                                                                                                                         cgcTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaa                             >  7:129052‑M2/1‑33 (MQ=255)                                                                                                                         cacggtccctggtagGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctaccctt                               <  2:99808‑M2/141‑115 (MQ=255)                                                                                                                            ggtccctggTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaagcc                          >  1:218885‑M2/4‑30 (MQ=255)                                                                                                                            ggtccctggTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtg                                         >  6:333608‑M2/4‑30 (MQ=255)                                                                                                                            ggtccctggTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtg                                         <  5:333608‑M2/131‑105 (MQ=255)                                                                                                                               ccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACaaaa                       >  4:259417‑M2/23‑149 (MQ=255)                                                                                                                                cctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAAc                      <  6:266261‑M2/128‑1 (MQ=255)                                                                                                                                ccTGGTAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaagccttca                      <  8:295454‑M2/149‑124 (MQ=255)                                                                                                                                    gtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGta                   >  3:160681‑M2/18‑148 (MQ=255)                                                                                                                                     tAGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaagccttcaccggt                 >  1:173010‑M2/1‑21 (MQ=255)                                                                                                                                      tggtGCGGGTATACCCGCTAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaagccttcaccggt                 >  7:149451‑M2/2‑20 (MQ=255)                                                                                                                                      aGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcaggtcagctgttcacgccggtgccgtggtctacccttaagccttcaccggtg                <  8:280595‑M2/149‑130 (MQ=255)                                                                                                                                      aGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccgg                                                                                                 >  7:18422‑M2/1‑20 (MQ=255)                                                                                                                                      aGGAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccgg                                                                                                 <  8:18422‑M2/68‑49 (MQ=255)                                                                                                                                       ggAGCGGGTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaagccttcaccggtgg               <  3:69876‑M2/149‑131 (MQ=255)                                                                                                                                          gcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATc                                         <  3:5429‑M2/109‑1 (MQ=255)                                                                                                                                          gcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATc                                         >  4:5429‑M2/12‑120 (MQ=255)                                                                                                                                          gcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACGGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACcg            >  1:227891‑M2/12‑149 (MQ=255)                                                                                                                                            gggTTTACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaagccttcaccggtggctcct          >  6:385823‑M2/1‑14 (MQ=255)                                                                                                                                               tttACCCGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagagcagatcagctgttcacgccgctgccgtggtctacccttaagccttcaccggtggctcctggc       <  7:128803‑M2/149‑139 (MQ=255)                                                                                                                                                  accCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCt    >  7:5706‑M2/4‑149 (MQ=255)                                                                                                                                                  accCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCt    >  1:272108‑M2/4‑149 (MQ=255)                                                                                                                                                   ccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCt    <  5:364800‑M2/146‑1 (MQ=255)                                                                                                                                                    ccGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaagccttcaccggtggctcctggctcggc  >  7:244128‑M2/1‑6 (MQ=255)                                                                                                                                                    ccGCGAagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaaccttacaatggagcagcgcagatcagctgttcacgccggtgccgtggtctacccttaagccttcaccggtggctcctggctcggc  <  3:72305‑M2/149‑144 (MQ=255)                                                                                                                                                    cCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCtt   >  5:306128‑M2/2‑148 (MQ=255)                                                                                                                                                    cCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCtt   >  7:215589‑M2/2‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CATTGAAAGGTTGAGGATGACCGGGTGCTT‑GGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GG‑TAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTG  >  NC_002947/4585962‑4586252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.