New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5874558	36 (0.600)	4 (0.070)	5/244	NT	9.8%	intergenic (‑50/+98)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	= 5874618	41 (0.740)					intergenic (‑110/+38)	PP_5148/ilvA‑II	membrane protein/threonine deaminase

GAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGT  >  NC_002947/5874412‑5874702                                                                                                                                                   |                                                                                                                                                   gAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTAc                                                                                                                                                  <  1:352096/149‑1 (MQ=255) gAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTAc                                                                                                                                                  <  3:69767/149‑1 (MQ=255)       gcCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTc                                                                                                                                            >  1:17015/1‑149 (MQ=255)               cAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCaa                                                                                                                                     <  7:224189/148‑1 (MQ=255)               cAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAg                                                                                                                                    <  1:20081/149‑1 (MQ=255)                 gATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGt                                                                                                                                  <  7:81504/149‑1 (MQ=255)                     gCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTAtct                                                                                                                              <  2:49297/149‑1 (MQ=255)                     gCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTAtc                                                                                                                               <  2:17015/148‑1 (MQ=255)                          gCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGc                                                                                                                         >  7:300906/1‑149 (MQ=255)                          gCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGc                                                                                                                         <  8:300906/149‑1 (MQ=255)                           cccAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGcc                                                                                                                        <  2:116976/149‑1 (MQ=255)                                 gcgcCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAgg                                                                                                                  <  4:330100/149‑1 (MQ=255)                                   gcCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGcc                                                                                                                >  7:257336/1‑149 (MQ=255)                                     ccAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTg                                                                                                              >  8:243902/1‑149 (MQ=255)                                           aCAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGGCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGt                                                                                                        <  7:133352/149‑1 (MQ=255)                                              gcagcGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTAcc                                                                                                     >  7:49007/1‑149 (MQ=255)                                                 gcgcGGTGTCTATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTGCCATCTCTCGGTCGTCCTTAAACTGGCATTTTTCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCtgt                                                                                                  <  3:143267/149‑1 (MQ=255)                                                     ggTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGa                                                                                            <  7:243902/149‑1 (MQ=255)                                                         gCGATGATGTGCAGGGTCTTGAGCGTTGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCTGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCgg                                                                                        <  7:242285/149‑1 (MQ=255)                                                           gatgatGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGc                                                                                      <  2:116812/149‑1 (MQ=255)                                                                tgtgCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTgcccgctcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaagcc                                                                                   <  8:248738‑M1/149‑66 (MQ=255)                                                                     aGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCaagcccgcg                                                                             <  7:161676‑M2/148‑10 (MQ=255)                                                                       ggTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTacccgctcctgccaaggtatcgcaggcctcaaggcctgagataccttggcaggagcgggtaagcccgcg                                                                               >  5:105444‑M1/1‑77 (MQ=255)                                                                         tCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCGCAGGCCTCAAGGCCTGAG‑A‑TACCTTGGCAGGAGCGGGTaagcccgcgaagaa                                                                        >  6:105444‑M2/1‑135 (MQ=255)                                                                            tGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGc                                                                      >  4:108375/1‑148 (MQ=255)                                                                                     tCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTgc                                                                                                             >  4:22962/1‑102 (MQ=255)                                                                                     tCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTgc                                                                                                             <  3:22962/102‑1 (MQ=255)                                                                                     tCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCt                                                            <  2:121594/149‑1 (MQ=255)                                                                                      cAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTgcccgctcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaag                                                                                     >  6:81439‑M1/1‑62 (MQ=255)                                                                                      cAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTgcccgctcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaag                                                                                     <  5:81439‑M1/125‑64 (MQ=255)                                                                                              ccACCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGc                                                    <  4:291838/148‑1 (MQ=255)                                                                                                  ctctcGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCt                                                >  5:367144/1‑148 (MQ=255)                                                                                                   tctcGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCAAGCTTAGCCGCt                                                >  8:255122/1‑147 (MQ=255)                                                                                                               ttAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAg                                  >  7:275753/1‑149 (MQ=255)                                                                                                                 aaaCTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGtt                                >  1:252771/1‑149 (MQ=255)                                                                                                                 aaaCTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGt                                 <  8:49007/148‑1 (MQ=255)                                                                                                                       gCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCTATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAg                           <  3:108375/148‑1 (MQ=255)                                                                                                                       gCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAgg                          >  7:353982/1‑149 (MQ=255)                                                                                                                        cATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGc                         >  8:352949/1‑149 (MQ=255)                                                                                                                                      ttcttcGCGGGCTTacccgctcctgccaaggtatctcaggccttgaggcctgcgataccttggcaggagcgggtaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctgaccacgctcaaga             >  6:105444‑M1/1‑14 (MQ=255)                                                                                                                                      ttcttcGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGtct           >  8:187405/1‑149 (MQ=255)                                                                                                                                        cttcGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCgg                      <  1:148913/136‑1 (MQ=255)                                                                                                                                        cttcGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGtctc          <  8:161676/148‑1 (MQ=255)                                                                                                                                           cgcgGGCTTgcccgctcccacaggtactgcgcaggcctcaaggcctgagataccttggcaggagcgggtaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctgaccacgctcaagaccct         <  7:161676‑M1/148‑140 (MQ=255)                                                                                                                                           cgcgGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCG‑A‑TACCTTGGCAGGAGCGGGTaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctgaccacgctcaagacc         >  5:105444‑M2/1‑69 (MQ=255)                                                                                                                                            gcgGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGAAGGCCGGGTTTTCGGTCTCGTcc      >  7:356112/1‑148 (MQ=255)                                                                                                                                             cgGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCa    <  8:257336/149‑1 (MQ=255)                                                                                                                                               ggCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctgaccacgctcaagaccctgcaca  <  8:248738‑M2/149‑85 (MQ=255)                                                                                                                                                 cTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctg                        >  6:81439‑M2/1‑63 (MQ=255)                                                                                                                                                 cTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctg                        <  5:81439‑M2/125‑63 (MQ=255)                                                                                                                                                  ttACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACa                                   >  6:370594/1‑113 (MQ=255)                                                                                                                                                  ttACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACa                                   <  5:370594/113‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGT  >  NC_002947/5874412‑5874702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.