New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5874558	36 (0.600)	4 (0.070)	5/244	NT	9.8%	intergenic (‑50/+98)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	= 5874618	41 (0.740)					intergenic (‑110/+38)	PP_5148/ilvA‑II	membrane protein/threonine deaminase

GATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGC  >  NC_002947/5874470‑5874764                                                                                                                                                       |                                                                                                                                                   gatgatGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGc                                                                                                                                                    <  2:116812/149‑1 (MQ=255)           aGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCaagcccgcg                                                                                                                                           <  7:161676‑M2/148‑10 (MQ=255)               tCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCGCAGGCCTCAAGGCCTGAG‑A‑TACCTTGGCAGGAGCGGGTaagcccgcgaagaa                                                                                                                                      >  6:105444‑M2/1‑135 (MQ=255)                  tGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGc                                                                                                                                    >  4:108375/1‑148 (MQ=255)                           tCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCt                                                                                                                          <  2:121594/149‑1 (MQ=255)                                    ccACCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGc                                                                                                                  <  4:291838/148‑1 (MQ=255)                                        ctctcGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCt                                                                                                              >  5:367144/1‑148 (MQ=255)                                         tctcGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCAAGCTTAGCCGCt                                                                                                              >  8:255122/1‑147 (MQ=255)                                                     ttAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAg                                                                                                >  7:275753/1‑149 (MQ=255)                                                       aaaCTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGtt                                                                                              >  1:252771/1‑149 (MQ=255)                                                       aaaCTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGt                                                                                               <  8:49007/148‑1 (MQ=255)                                                             gCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCTATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAg                                                                                         <  3:108375/148‑1 (MQ=255)                                                             gCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAgg                                                                                        >  7:353982/1‑149 (MQ=255)                                                              cATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGc                                                                                       >  8:352949/1‑149 (MQ=255)                                                                            ttcttcGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGtct                                                                         >  8:187405/1‑149 (MQ=255)                                                                              cttcGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCgg                                                                                    <  1:148913/136‑1 (MQ=255)                                                                              cttcGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGtctc                                                                        <  8:161676/148‑1 (MQ=255)                                                                                 cgcgGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCG‑A‑TACCTTGGCAGGAGCGGGTaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctgaccacgctcaagacc                                                                       >  5:105444‑M2/1‑69 (MQ=255)                                                                                  gcgGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGAAGGCCGGGTTTTCGGTCTCGTcc                                                                    >  7:356112/1‑148 (MQ=255)                                                                                   cgGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCa                                                                  <  8:257336/149‑1 (MQ=255)                                                                                     ggCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctgaccacgctcaagaccctgcaca                                                                <  8:248738‑M2/149‑85 (MQ=255)                                                                                       cTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctg                                                                                      <  5:81439‑M2/125‑63 (MQ=255)                                                                                       cTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCaagcccgcgaagaagctaccgcaaaatgccagtttaaggacgaccgagagatggaacacctg                                                                                      >  6:81439‑M2/1‑63 (MQ=255)                                                                                        ttACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACa                                                                                                 <  5:370594/113‑1 (MQ=255)                                                                                        ttACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACa                                                                                                 >  6:370594/1‑113 (MQ=255)                                                                                          aCCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACgg                                                            <  7:352949/148‑1 (MQ=255)                                                                                            ccGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGt                                                          >  8:244274/1‑148 (MQ=255)                                                                                                     ccAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCtt                                                >  3:315920/1‑149 (MQ=255)                                                                                                      cAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GTAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTg                                               <  8:353982/149‑1 (MQ=255)                                                                                                      cAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTg                                               >  2:71344/1‑149 (MQ=255)                                                                                                      cAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTg                                               >  7:95639/1‑149 (MQ=255)                                                                                                         ggTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGc                                             >  2:110103/1‑148 (MQ=255)                                                                                                          actgcgcAGGCCTCAAGGCCTGCGCAGAACCAGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCa                                                                  >  7:234179/7‑126 (MQ=38)                                                                                                             tctcAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAgcg                                        >  2:79287/1‑149 (MQ=255)                                                                                                               tcAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGATAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCt                                      >  1:279294/1‑149 (MQ=255)                                                                                                                cAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGAGCTTGGCCAGCGCTg                                     >  3:206123/1‑149 (MQ=255)                                                                                                                    ccTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCgg                                 <  8:95639/149‑1 (MQ=255)                                                                                                                          ggCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAg                           <  1:110103/149‑1 (MQ=255)                                                                                                                           gCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAgg                          >  6:57223/1‑149 (MQ=255)                                                                                                                            ccTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGt                         <  7:255122/149‑1 (MQ=255)                                                                                                                            ccTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGt                         <  7:187405/149‑1 (MQ=255)                                                                                                                             cTGCTCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGt                         <  1:76917/148‑1 (MQ=255)                                                                                                                             cTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGt                         >  2:76917/1‑148 (MQ=255)                                                                                                                              tGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGa                       >  1:221542/1‑149 (MQ=255)                                                                                                                                cgcAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACg                     >  5:261460/1‑149 (MQ=255)                                                                                                                                    gTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCg                 <  2:252771/149‑1 (MQ=255)                                                                                                                                         tgtg‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGtcctc            >  7:150572/1‑149 (MQ=255)                                                                                                                                           tg‑‑GGAGGGGGCAAGCGCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCg          <  1:79287/149‑1 (MQ=255)                                                                                                                                               ggAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCgg         >  6:258404/1‑148 (MQ=255)                                                                                                                                                     ggCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGc  <  6:367144/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                   GATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTG‑‑GGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGC  >  NC_002947/5874470‑5874764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.