New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 111497	55 (0.910)	3 (0.050)	3/256	NT	5.7%	coding (1517/1590 nt)	ctaD	cytochrome c oxidase subunit 1
	?	NC_002947	= 111528	46 (0.790)					coding (1548/1590 nt)	ctaD	cytochrome c oxidase subunit 1

GTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGCCGATCTACGAC  >  NC_002947/111385‑111675                                                                                                                                                 |                                                                                                                                                    gtgtCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTgcgcc                                                                                                                                                <  4:318705‑M2/149‑6 (MQ=255)   gtcgtcGCTCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGGCGATACCCTCGCCTGCGCCCt                                                                                                                                              <  2:301682/149‑1 (MQ=255)      gtcgATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTAc                                                                                                                                            >  5:40935/1‑148 (MQ=255)      gtcgATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTAc                                                                                                                                            >  7:154340/1‑148 (MQ=255)       tcgATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGTCGACGAGTGCCTTGAGTGGTCGATACACTCGCCTGCGCCCTAcc                                                                                                                                           >  7:121698/1‑148 (MQ=255)         gATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGAGGTCGAAACCCTCGCCAGCGCCCTACcaca                                                                                                                                        >  2:57175/1‑149 (MQ=255)              gcgcGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTc                                                                                                                                   >  5:371347/1‑149 (MQ=255)                  gTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGa                                                                                                                               >  1:126791/1‑149 (MQ=255)                  gTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGa                                                                                                                               <  5:232865/149‑1 (MQ=255)                     cATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTcc                                                                                                                                  >  3:10283/1‑143 (MQ=255)                     cATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTcc                                                                                                                                  <  4:10283/143‑1 (MQ=255)                         ttCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCAGCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACAccccc                                                                                                                        <  2:129873/149‑1 (MQ=255)                          tCGGCGCCACGCAGATCTTGTTCCTGTTCATTGTCATCAA‑GTGCATCCGGGGTTGCGCGTCGGCACCGGCCAAACCCTGGGATGGCTCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCAGTCCTTCCAGACAccgccg                                                                                                                       <  8:104610/149‑1 (MQ=255)                             gcgcCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGaa                                                                                                                    <  2:263287/149‑1 (MQ=255)                              cgcCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAg                                                                                                                   <  7:213543/149‑1 (MQ=255)                                ccACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTg                                                                                                                 <  3:244610/149‑1 (MQ=255)                                    gCAGATCTTCTTCCTGTTCATTGTCATCAAGGTGCATCCGCGTTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGaa                                                                                                               >  1:223332/1‑148 (MQ=255)                                    gCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAAt                                                                                                             <  6:40935/149‑1 (MQ=255)                                    gCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAAt                                                                                                             <  6:371347/149‑1 (MQ=255)                                     cAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATa                                                                                                            <  3:318705/149‑1 (MQ=255)                                      aGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCACACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAg                                                                                                           >  8:324060/1‑149 (MQ=255)                                                 cTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACGCCCGGAAGCGAAATAGGAACCCGCCa                                                                                                 <  7:252122/148‑1 (MQ=255)                                                    ttCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGCGATGGCGCCGAGGGCCTTGAGTGGACGATACCCTCGCCTGCGCCCAACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGACCCCGCCATGaa                                                                                             >  6:187650/1‑149 (MQ=255)                                                        ttGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCTGAAGTGAAATAGGAACCCGCCATGAACGGc                                                                                         <  5:187650/149‑1 (MQ=255)                                                        ttGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGc                                                                                         >  8:52167/1‑149 (MQ=255)                                                        ttGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGc                                                                                         <  1:57175/149‑1 (MQ=255)                                                                   gTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTg                                                                                >  5:51511/1‑148 (MQ=255)                                                                   gTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTg                                                                                >  7:344553/1‑148 (MQ=255)                                                                       aTCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAAt                                                                                                             >  2:197009/1‑115 (MQ=255)                                                                       aTCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAAt                                                                                                             <  1:197009/115‑1 (MQ=255)                                                                       aTCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACg                                                                           >  1:158720/1‑149 (MQ=255)                                                                          cgcgGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACcac                                                                                                                                         <  5:278526/84‑1 (MQ=255)                                                                          cgcgGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACcac                                                                                                                                         >  6:278526/1‑84 (MQ=255)                                                                          cgcgGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCt                                                                        <  8:154340/149‑1 (MQ=255)                                                                                      ccGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCt                                                            >  8:317023/1‑149 (MQ=255)                                                                                      ccGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCt                                                            <  2:223332/149‑1 (MQ=255)                                                                                        ggCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGt                                                          <  1:84593/149‑1 (MQ=255)                                                                                            ccGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGAt                                                      <  6:84006/149‑1 (MQ=255)                                                                                                ccAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGaa                                                                                                        <  3:303809/95‑1 (MQ=255)                                                                                                ccAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGaa                                                                                                        >  4:303809/1‑95 (MQ=255)                                                                                                  aaaCCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGAc                                                <  2:158720/149‑1 (MQ=255)                                                                                                       cTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACggtgg                                           >  5:57319/1‑149 (MQ=255)                                                                                                        tGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTgcgccatcccagggtttggccggtgccggcgcgccaccgcggatgcacttgatgacaatgaacaggaagaagatctgcgtggcgccgaacatgaacgcgccgatcga                                          <  6:78326‑M2/149‑108 (MQ=255)                                                                                                           gATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTgcgccatcccagggtttggccggtgccggcgcgccaccgcggatgcacttgatgacaatgaacaggaagaagatctgcgtggcgccgaacatgaacgcgccgatcgacga                                       <  5:229715‑M2/149‑111 (MQ=255)                                                                                                               gcgcCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTc                                   <  2:126791/149‑1 (MQ=255)                                                                                                                 gcCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGc                                 <  6:51511/149‑1 (MQ=255)                                                                                                                    gAGGGCCTTGAGTGGTCGATACCCTCGCCTgcgccatcccagggtttggccggtgccggcgcgccaccgcggatgcacttgatgacaatgaacaggaagaagatctgcgtggcgccgaacatgaacgcgccgatcgacgacaccatgtt                              >  6:229715‑M2/1‑30 (MQ=255)                                                                                                                      tggCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCg                            <  8:107216/148‑1 (MQ=255)                                                                                                                               gTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCgcgc                   >  2:244156/1‑149 (MQ=255)                                                                                                                                   tCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTAGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGt               >  7:54330/1‑149 (MQ=255)                                                                                                                                     gATACCCTCGCCTGCGCCCTACCACACCTTCCAGCCACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGCACCGCCTTGTAACGCGCCTGTTGCTGCTGACGGTGGTTATGTTCGCCTTAGGCTTCGCGATGGTg              >  4:232459/1‑148 (MQ=255)                                                                                                                                          ccTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTAAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGATTCGCGCTGGTGCCGATc        >  2:279164/1‑149 (MQ=255)                                                                                                                                          ccTCGCCTGCGCCCTACCACACCATCCAGCCACCCCCGGAAGTCAAATAGGAACCCGCCATCAACGGCCTGACGGTGAACCGCCTCGTAACGCGCCTCTTGATGCTGACGCTGGAGCTGTTAGCCTTCGGCTTCGCGCTCGTGCCGAt         >  5:147513/1‑148 (MQ=255)                                                                                                                                            tCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGCCGATCTa      >  7:333870/1‑149 (MQ=255)                                                                                                                                               ccTGCGCCCTAACACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACACGCCATGAACGGCCTGTCGGTGAAACGGCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCATTCGGCTTCGCGCTGGTGCCGATCTacga   <  8:121698/149‑1 (MQ=255)                                                                                                                                                cTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGCCGATCTacgac  <  7:324060/149‑1 (MQ=255)                                                                                                                                                 tGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGt               <  4:76336/135‑1 (MQ=255)                                                                                                                                                 tGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGt               >  3:76336/1‑135 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GTGTCGTCGATCGGCGCGTTCATGTTCGGCGCCACGCAGATCTTCTTCCTGTTCATTGTCATCAA‑GTGCATCCGCGGTGGCGCGCCGGCACCGGCCAAACCCTGGGATGGCGCCGAGGGCCTTGAGTGGTCGATACCCTCGCCTGCGCCCTACCACACCTTCCAGACACCCCCGGAAGTGAAATAGGAACCCGCCATGAACGGCCTGTCGGTGAAACGCCTGGTAACGCGCCTGTTGATGCTGACGGTGGTGATGTTCGCCTTCGGCTTCGCGCTGGTGCCGATCTACGAC  >  NC_002947/111385‑111675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.