New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 668081	43 (0.710)	5 (0.100)	5/218	NT	13.7%	intergenic (+45/+107)	yfhM/PP_0571	lipoprotein/membrane protein
	?	NC_002947	= 668150	28 (0.570)					intergenic (+114/+38)	yfhM/PP_0571	lipoprotein/membrane protein

GGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAG  >  NC_002947/668011‑668295                                                                                                                                            |                                                                                                                                                  gggAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacg                                                                                                                                           <  1:21697‑M2/148‑9 (MQ=255)     gaTGACGGTGAAAGCCCGCTAGAGACCCGCTCTACTCGGAAAGGGTGGGCGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaagg                                                                                                                                      >  6:292357‑M2/1‑136 (MQ=255)     gaTGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaagg                                                                                                                                      >  2:21697‑M2/1‑136 (MQ=255)     gaTGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaagg                                                                                                                                      >  4:36464‑M2/1‑136 (MQ=255)           ggTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTGAAGCGGCGAAGCTGCAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacggaaggccgctc                                                                                                                                <  5:305204‑M2/149‑20 (MQ=255)                 aGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTGGCGGTAGGGCCGCCAAGCGGCCCCGCCAATTCAAGCGGCGAAGCTGAAAGGCTGGGGCTGCTGTGCAGCCCAGtggcgacgccaggccgctccccca                                                                                                                           <  3:105246‑M2/148‑25 (MQ=255)                  gCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTAAAGAGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACaa                                                                                                                          >  8:76370/1‑148 (MQ=255)                        tAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAAATCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACcgc                                                                                                                   >  7:330915/1‑149 (MQ=255)                          gagaCCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGGGTCGGGATAGGGCCGCCAAGCGGCCCCGACCATTGAAGCGGCGCAGCTGGAAGCCTGGGGCTGGGGTGCAGCCCGGTCGCGCCGCACGGCCGCGGCCCCAAAGACcgcgg                                                                                                                 >  3:246143/1‑148 (MQ=25)                               ccGCTCTACGCAGAAAGTGTGGGAGCGGCCCTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCACCGCCGCTCCCACAAAGCCCCCGCAgct                                                                                                             >  8:104802/1‑146 (MQ=25)                                cGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGCTAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCGGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGCCGCAAGGGCGCTGCCACAAAGTCCGCGCAgct                                                                                                             >  5:199/1‑145 (MQ=25)                                  gtctAGGCGTAATGTGTGGTTGCGGCCTTGGGTCGCTTTTGGGCCGAAAAGCGGCCCCGACAATTCACGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCTACGAAAGGCCGCTCCCACAAAGACCGCGCAGATCAGt                                                                                                         <  2:43924/148‑1 (MQ=37)                                                  tgGGAGCGGCCATTCGTAGCGATAGGGCCGCAAAGCGGCCCCCACAAATAAAACGGCGAAGCGGAAAGCCAGGGGCTGCTGTGCAGCCCAGTAGCGAAGCCAGGCCGCTCCCACAAAGAACCCGCAGATCAGTGGATCACCCAGCgca                                                                                          >  6:131825/1‑148 (MQ=25)                                                     gAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGACGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGt                                                                                                         >  5:260617/1‑130 (MQ=255)                                                         ggCGTTGCGGCGCTATCGGCCCGAAACGCGCCCCCCAAAATTCACGCGGCTACGCGTAATGCCTGGGGCTGGTGTGCCGCCGTGTCGCGCCGAACGCCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCcac                                                                                  <  4:105246/149‑1 (MQ=255)                                                           ccTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatc                                                                                <  6:90468‑M2/149‑68 (MQ=255)                                                            cTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGc                                                                               >  8:75586/1‑149 (MQ=255)                                                             ttGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCCCAGcc                                                                              >  3:12947/1‑149 (MQ=255)                                                               gCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCGGGCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGcc                                                                              <  2:299899/147‑1 (MQ=255)                                                                 gTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatctcccct                                                                          <  7:204682‑M2/149‑74 (MQ=255)                                                                       tcggggCCGCTTTGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTTCAGCCCTGTCGCGACGCAAGGCCGCTCCCCCAAAGACCGCGCAGATCAGTGGATCACCCCCCTCATCACCCCCAGCCCCACCAccag                                                                    >  3:64328/4‑149 (MQ=38)                                                                          gggCCGCTTTGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCAcc                                                                                     >  7:80837/1‑129 (MQ=255)                                                                          gggCCGCTTTGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCAcc                                                                                     <  8:80837/129‑1 (MQ=255)                                                                           ggCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatctccccttgcccatcgc                                                                <  6:10217‑M2/149‑84 (MQ=255)                                                                            gCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCAccagc                                                                   >  8:225759/1‑145 (MQ=255)                                                                            gCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAga                                                               <  7:76370/149‑1 (MQ=255)                                                                              cGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAgatg                                                             <  6:339314/149‑1 (MQ=255)                                                                              cGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAgat                                                              >  5:339314/1‑148 (MQ=255)                                                                               gCAAAGCGGCCCCTACAATTCAAGCGGCGAAGCTTAAAGCCTGGGGCTGCTGTGCAGCCCTGGCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAgatga                                                            <  6:305204/149‑1 (MQ=255)                                                                                cAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCAcc                                                                                     <  3:174526/123‑1 (MQ=255)                                                                                cAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCAcc                                                                                     >  4:174526/1‑123 (MQ=255)                                                                                         cccGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGgat                                                  >  8:286517/1‑149 (MQ=255)                                                                                          ccGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGgat                                                  >  7:233396/1‑148 (MQ=255)                                                                                            gACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGATGCTGTGCAGCCCTAtctcgacgcaaggccgctcccacactttccgcttagagcgggtctctagcgggcgtgcacagtcatctcccctttcccatcgcacacggccttcaggt                                                 <  3:218756‑M2/147‑99 (MQ=255)                                                                                                   cAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatctccccttgcccatcgcccacggcctgcaggttcggccgg                                         >  5:90468‑M2/1‑42 (MQ=255)                                                                                                    acgcggccAAGCTGAACGCGGGGGGCTGCTGGGCAGCCGTGTCGCCACGAAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGgcgc                                       <  8:330915/147‑1 (MQ=255)                                                                                                              gCTGAAAGCCTGGGGCTGCTGTGCATCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATgc                             <  8:233396/149‑1 (MQ=255)                                                                                                                        tGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGcc                   >  4:317018/1‑149 (MQ=255)                                                                                                                            gctgctGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAg                >  3:58944/1‑148 (MQ=255)                                                                                                                                   tgCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTAcagca         <  7:75586/148‑1 (MQ=255)                                                                                                                                         ccTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAg  >  3:320683/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                  GGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAG  >  NC_002947/668011‑668295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.