New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1690012	39 (0.650)	5 (0.090)	5/254	NT	10.8%	coding (819/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein
	?	NC_002947	= 1690047	45 (0.780)					coding (784/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein

ACCTTAGGTTGCAACGACCAGTCCATCCACTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTATTGTGCCTCGTTCA  >  NC_002947/1689899‑1690193                                                                                                                                                      |                                                                                                                                                   aCCTTAGGTTGCAACGACCAGTCCATCCACTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCAtt                                                                                                                                                    >  2:96249/1‑149 (MQ=255)   cTTAGGTTGCAACGACCAGTCCATCCACTTGTCGGCGCATTTGGGGTGCTTGGCCGCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGGCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTga                                                                                                                                                  >  7:5301‑M2/1‑147 (MQ=255)   cTTAGGTTGCAACGACCAGTCCATCCACTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTga                                                                                                                                                  <  6:22446‑M2/149‑3 (MQ=255)   cTTAGGTTGCAACGACCAGTCCATCCACTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTga                                                                                                                                                  <  1:305374‑M2/149‑3 (MQ=255)                 aCCTGTCCATCCACTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTTCAGCATGGTGGTGTCGGCCCATCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGTGGCCATTGACCATGTAGCCCCAg                                                                                                                                    <  7:291774/149‑1 (MQ=255)                      tccatccaCTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGGCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCt                                                                                                                               <  1:201514/149‑1 (MQ=255)                      accatccaCTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCt                                                                                                                               >  6:193501/2‑149 (MQ=255)                        catccaCTTGTAGGCGCAATTTGGGTGCTTGGCCTCGGCGTGCAGCATTGGGGTGGCGGCCCAGCCGGTCGCGCCCTCCTTTGGAATGGTCGAGTGCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCtt                                                                                                                              <  1:96249/149‑1 (MQ=255)                         atccaCTTGTAGGCGCAATTGGGGTGCTTGGCCTCTGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGccc                                                                                                                                       <  3:200560/138‑1 (MQ=255)                         atccaCTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGccc                                                                                                                                       >  4:200560/1‑138 (MQ=255)                          tccaCTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAg                                                                                                                           <  1:276822/149‑1 (MQ=255)                          tccaCTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAg                                                                                                                           <  3:139747/149‑1 (MQ=255)                                    ggCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACg                                                                                                                  <  2:305374/148‑1 (MQ=255)                                      cgcAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCt                                                                                                               >  4:162760/1‑149 (MQ=255)                                       gcAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCtt                                                                                                              >  3:18955/1‑149 (MQ=255)                                             ggggTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGttt                                                                                                         <  4:18955/148‑1 (MQ=255)                                               ggTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGttttt                                                                                                       >  5:158906/1‑148 (MQ=255)                                                       gCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCt                                                                                                               <  3:10315/132‑1 (MQ=255)                                                       gCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCt                                                                                                               >  4:10315/1‑132 (MQ=255)                                                            ggCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATc                                                                                          <  6:201599/148‑1 (MQ=255)                                                                              gtCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGc                                                                        >  2:198956/1‑148 (MQ=255)                                                                               tCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGcc                                                                       >  7:249291/1‑148 (MQ=255)                                                                                 ggCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCaa                                                                     >  3:302836/1‑148 (MQ=255)                                                                                 ggCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCaa                                                                     >  6:139697/1‑148 (MQ=255)                                                                                 ggCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGGCATGCCaa                                                                     >  2:36177/1‑148 (MQ=255)                                                                                  gCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCCTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCaa                                                                     >  2:338569/1‑147 (MQ=255)                                                                                    ccAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGc                                                                 >  3:85238/1‑149 (MQ=255)                                                                                       gCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGt                                                              <  5:22446/149‑1 (MQ=255)                                                                                       gCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTGTCACATCGCTCATCTGGACCGTg                                                                                 >  3:298606/1‑130 (MQ=255)                                                                                       gCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTCTCACATCGCTCATCTGGACCGTg                                                                                 <  4:298606/130‑1 (MQ=255)                                                                                        ccGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTg                                                             <  6:158906/149‑1 (MQ=255)                                                                                        ccGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTg                                                             <  4:302836/149‑1 (MQ=255)                                                                                                   ctcctTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGgtt                                                  <  8:249291/149‑1 (MQ=255)                                                                                                      ctTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTgaccattcccaaggagggcgcgaccggctgggccgacaccaccatgctgcacgccgaggccaagcaccccaattgcgcctacaagtggatggactggtcgt                                               <  4:349899‑M2/149‑102 (MQ=255)                                                                                                       ttGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAg                                                                                                                                    >  5:224401/1‑63 (MQ=255)                                                                                                       ttGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAg                                                                                                                                    <  6:224401/63‑1 (MQ=255)                                                                                                       ttGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGt                                                              >  7:99431/1‑133 (MQ=255)                                                                                                       ttGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGt                                                              <  8:99431/133‑1 (MQ=255)                                                                                                         gggAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTgaccattcccaaggagggcgcgaccggctgggccgacaccaccatgctgcacgccgaggccaagcaccccaattgcgcctacaagtggatggactggtcgttg                                             <  5:154554‑M2/148‑104 (MQ=255)                                                                                                         gggAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTgaccattcccaaggagggcgcgaccggctgggccgacaccaccatgctgcacgccgaggccaagcaccccaattgcgcctacaagtggatggactggtcgtt                                              >  3:349899‑M2/1‑45 (MQ=255)                                                                                                               ggTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGgcg                                        >  4:356389/1‑147 (MQ=255)                                                                                                                gTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCgcag                                     >  8:340016/1‑149 (MQ=255)                                                                                                                 tCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCC‑TCgaccattcccaaggagggcgcgaccggctgggccgacaccaccatgctgcacgccgaggccaagcaccccaattgcgcctacaagt                                                              >  6:290531‑M2/1‑36 (MQ=255)                                                                                                                 tCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCC‑TCgaccattcccaaggagggcgcgaccggctgggccgacaccaccatgctgcacgccgaggccaagcaccccaattgcgcctacaagt                                                              <  5:290531‑M2/122‑87 (MQ=255)                                                                                                                                    tctcGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGgcgc                                       >  7:133436/1‑128 (MQ=255)                                                                                                                                    tctcGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGgcgc                                       <  8:133436/128‑1 (MQ=255)                                                                                                                                      tcGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCTGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTa                <  7:340016/149‑1 (MQ=255)                                                                                                                                      tcGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTa                >  8:131206/1‑149 (MQ=255)                                                                                                                                       cGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGgttgtt                                               >  7:278617/1‑117 (MQ=255)                                                                                                                                       cGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGgttgtt                                               <  8:278617/117‑1 (MQ=255)                                                                                                                                        ggCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTAtt              >  7:14186/1‑149 (MQ=255)                                                                                                                                        ggCCCTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTa                <  1:338569/147‑1 (MQ=255)                                                                                                                                              gAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCTTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTATTGTGCCt        >  4:232924/1‑149 (MQ=255)                                                                                                                                                 gCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTATTGTGCCTCGt     >  6:68341/1‑149 (MQ=255)                                                                                                                                                    aTTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTATTGTGCCTCGTTCa  <  7:131206/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   ACCTTAGGTTGCAACGACCAGTCCATCCACTTGTAGGCGCAATTGGGGTGCTTGGCCTCGGCGTGCAGCATGGTGGTGTCGGCCCAGCCGGTCGCGCCCTCCTTGGGAATGGTCGAG‑GCCACTGGCTGGTTCTCGGCCTTGAGGCCATTGACCATGTAGCCCCAGGAGCTTGAGGCAACCACGCCTTCGTTTTTCACATCGCTCATCTGGACCGTGGCGTCATGCCAATAGCGGTGGATCAGCGGTTGTTGCTGGCGCAGCAGTTCCAGCACGGCCTTGTATTGTGCCTCGTTCA  >  NC_002947/1689899‑1690193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.