New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2342349 =	53 (0.880)	4 (0.070)	4/252	NT	8.0%	coding (201/1254 nt)	PP_2058	porin
	?	NC_002947	2342442 =	42 (0.740)					coding (294/1254 nt)	PP_2058	porin

GGTATGAGCGCCCGCGCCGCCGCCACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGCACCTTGCTGCCCAAGAC  >  NC_002947/2342296‑2342585                                                                                                                                                       |                                                                                                                                                ggTATGAGCGCCCGCGCCGCCGCCACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTc                                                                                                                                               <  1:133053/149‑1 (MQ=255) gaccatcgtcatgcaccggcaacagtccggtgccgctgcgcccacggccggagTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTc                                                                                                                                               >  1:113475‑M1/54‑149 (MQ=255)   tATGAGCGCCCGCGCCGCCGCCACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCg                                                                                                                                             <  3:233371/149‑1 (MQ=255)      gAGCGCCCGCGCCGCCGCCACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCATGGGCTTGTGGGTCGACGCCATGGGCCGGCTGG‑GCGTACGGCTTGACTCCGGcc                                                                                                                                          >  8:341855/1‑149 (MQ=255)       aGCGCCCGCGCCGCCGCCACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCTGAGGTCGCCTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGc                                                                                                                                           >  1:293991/1‑149 (MQ=255)            ccGCGCCGCCGCCACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGCCTACCAGTCGGGTTTTACCCAAGGC‑ACCCGGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTTCGCCTTGACTCCGGCCGTGGgc                                                                                                                                    >  3:8445/1‑149 (MQ=255)                      gccACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCAc                                                                                                                          <  2:293991/149‑1 (MQ=255)                      gccACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGAATCCGGCCGTGGGCGCAGCGGCAc                                                                                                                          >  8:165146/1‑149 (MQ=255)                       ccACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCAcc                                                                                                                         <  3:347803/149‑1 (MQ=255)                        cACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCg                                                                                                                        <  8:275823/149‑1 (MQ=255)                             ccAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGGCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTg                                                                                                                   <  8:2713/149‑1 (MQ=255)                              cAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGt                                                                                                                  <  8:252836/149‑1 (MQ=255)                                    cGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCgg                                                                                                            <  4:272763/149‑1 (MQ=255)                                       aCGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGc                                                                                                         <  6:290036/149‑1 (MQ=255)                                         gggTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCACCGGCAACAGTCCGGTGCCGCTGcgc                                                                                                       <  2:373240/149‑3 (MQ=255)                                               aaTGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGAt                                                                                                 >  1:260035/1‑149 (MQ=255)                                                    gCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGCGACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTc                                                                                             >  1:265220/1‑149 (MQ=255)                                                       gagtcaaggcgtacgcccagcaggcccatggcgtcgacgcccaagcccagggtgccttgggtaaaacccgactggtagtcgagcagaaagccttgaCTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTc                                                                                             >  1:113475‑M2/97‑149 (MQ=255)                                                        AAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTcgcgc                                                                                         >  2:265220‑M1/1‑148 (MQ=255)                                                            aaggcgtacgcccagcaggcccatggcgtcgacgcccaagcccagggtgccttgggtaaaacccgactggtagtcgagcagaaagccttgaCTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTc                                                                                             >  4:139950‑M2/92‑144 (MQ=255)                                                            aaggcgtacgcccagcaggcccatggcgtcgacgcccaagcccagggtgccttgggtaaaacccgactggtagtcgagcagaaagccttgaCTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTc                                                                                             <  3:139950‑M2/53‑1 (MQ=255)                                                                        gACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGc                                                                          >  7:47309/1‑149 (MQ=255)                                                                        gACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCAGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGc                                                                          <  1:34601/149‑1 (MQ=255)                                                                          cTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCa                                                                        <  3:28756/149‑1 (MQ=255)                                                                             ccAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAgcg                                                                     >  1:177132/1‑149 (MQ=255)                                                                             ccAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATACGCCAgcg                                                                     >  1:142184/1‑149 (MQ=255)                                                                              cAGTCGGGTTTTACCCAAGGC‑CCCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGGAGCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAgcg                                                                     >  1:289487/1‑149 (MQ=255)                                                                               aGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACACCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGcc                                                                   >  5:353161/1‑149 (MQ=255)                                                                                  cGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCgg                                                                 <  7:341855/148‑1 (MQ=255)                                                                                       tttACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCAc                                                           >  6:242919/1‑149 (MQ=255)                                                                                         tACCCATGGC‑ACCCTGGGGTGGGGGGTGGAGGCCTTGGGCGTGCTGG‑GCGTACGCCTGGACTCGGGCCGTGGGGGCTGCGGCACGGGACTGTTTCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACg                                                          <  1:96331/148‑1 (MQ=255)                                                                                           cccAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGcc                                                       <  7:165146/149‑1 (MQ=255)                                                                                            ccAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGcc                                                       >  1:259028/1‑148 (MQ=255)                                                                                                 aagcccagggtgccttgggtaaaacccgactggtagtcgagcagaaagccttgaCTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAg                                                   <  2:113475‑M2/95‑1 (MQ=255)                                                                                                      ccTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGcc                                             >  7:338336/1‑149 (MQ=255)                                                                                                        tGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTg                                           >  1:366003/1‑149 (MQ=255)                                                                                                            cTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGgca                                       <  1:127621/149‑1 (MQ=255)                                                                                                               gggCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGgcagc                                     <  8:47309/148‑1 (MQ=255)                                                                                                                   gTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGt                                >  1:151639/1‑149 (MQ=255)                                                                                                                    tCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTg                               >  6:352372/1‑149 (MQ=255)                                                                                                                      gACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGt                             >  4:313478/1‑149 (MQ=255)                                                                                                                         gCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTc                            >  7:103309/1‑147 (MQ=255)                                                                                                                           cctGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATACGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGc                        <  2:142184/147‑1 (MQ=255)                                                                                                                           cATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAg                         >  4:264812/1‑148 (MQ=255)                                                                                                                               ggCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATgg                    <  5:352372/149‑1 (MQ=255)                                                                                                                                gCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATgg                    >  7:172480/1‑148 (MQ=255)                                                                                                                                gCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGc                   <  8:103309/149‑1 (MQ=255)                                                                                                                                     ctgG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGCACCtt              <  2:177132/149‑1 (MQ=255)                                                                                                                                        g‑gCGTTCGCCTGTAGTCCGGGCGTGGGCGCAGCTGCACCGGAGTGTTGCCGGTGCATGACGCTGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCTCGGCCAAAGGCCGGCTGGGCAGCACCGTGGTCAAGCATGGCACCTtgct           <  4:8445/149‑1 (MQ=255)                                                                                                                                        g‑gCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGCACCTtgct           >  1:296715/1‑149 (MQ=255)                                                                                                                                            gTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGCACCTTGCTGcc        >  2:245153/1‑149 (MQ=255)                                                                                                                                             tACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGCACCTTGCTGccc       <  1:245153/149‑1 (MQ=255)                                                                                                                                                gacttgaCTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGCACCTTGCTGccc       >  4:155839‑M2/8‑146 (MQ=255)                                                                                                                                                  cttgaCTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGCACCTTGCTGCCCAAGAc  >  1:249773‑M2/6‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                                GGTATGAGCGCCCGCGCCGCCGCCACTGCCAAAAGCGAACGGGTGGAATGGGCTCAAGGCTTTCT‑‑GCTCGACTACCAGTCGGGTTTTACCCAAGGC‑ACCCTGGGCTTGGGCGTCGACGCCATGGGCCTGCTGG‑GCGTACGCCTTGACTCCGGCCGTGGGCGCAGCGGCACCGGACTGTTGCCGGTGCATGACGATGGTCGCGCGGCCGACGAATTCGCCAGCGCCGGTATCACGGCCAAAGCCCGCCTGGGCAGCACCGTGGTCAAGCATGGCACCTTGCTGCCCAAGAC  >  NC_002947/2342296‑2342585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.