New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2488022	37 (0.620)	3 (0.050)	3/256	NT	7.8%	coding (394/516 nt)	PP_2182	hypothetical protein
	?	NC_002947	= 2488049	35 (0.600)					coding (421/516 nt)	PP_2182	hypothetical protein

AAGCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGG  >  NC_002947/2487902‑2488197                                                                                                                                                    |                                                                                                                                                     aaGCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACg                                                                                                                                                     <  7:60395‑M2/149‑2 (MQ=255)   gCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACgca                                                                                                                                                   >  8:133620‑M2/1‑146 (MQ=255)   gCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACg                                                                                                                                                     <  1:114374‑M2/147‑2 (MQ=255)   gCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACg                                                                                                                                                     <  7:256870‑M2/147‑2 (MQ=255)       ggCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCa                                                                                                                                               <  8:212758/149‑1 (MQ=255)        gCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGACGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAg                                                                                                                                              >  3:122746/1‑149 (MQ=255)           tttCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGAc                                                                                                                                           <  6:99514/149‑1 (MQ=255)               cACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGAc                                                                                                                                       <  6:10371/149‑1 (MQ=255)                     gtgCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATc                                                                                                                                 <  1:224296/149‑1 (MQ=255)                           gggCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGa                                                                                                                           <  8:60395/149‑1 (MQ=255)                            ggCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGTCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGaa                                                                                                                          <  7:8854/149‑1 (MQ=255)                               gcTCGATACTGTGCGAGGATGGGTGAGAATTCACCGCGCCTTGACCTGAATGGTCAGGCCGCAGGTACTGTGACCGCCGCGCATGCGCTGCATGCCAAGCAGCAGGCTGCGCGTCAACGCAGCCATTACCGACGCAATCGTGCGAAGTc                                                                                                                       <  6:38855/149‑1 (MQ=255)                                   gATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAag                                                                                                                   >  6:25060/1‑149 (MQ=255)                                      aCTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAaggcc                                                                                                                >  6:89368/1‑149 (MQ=255)                                       cTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGTATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAaggcc                                                                                                                <  5:324110/148‑1 (MQ=255)                                              aGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGCCCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAggcccaggccca                                                                                                        <  8:279878/149‑1 (MQ=255)                                                     tggAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCTCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCg                                                                                                 <  8:256870/149‑1 (MQ=255)                                                     tggAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCg                                                                                                 >  5:182837/1‑149 (MQ=255)                                                        agaATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGcc                                                                                              <  2:114374/149‑1 (MQ=255)                                                               aCCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAg                                                                                                                                              <  8:127958/94‑1 (MQ=255)                                                                 cgcgCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCccgccgcc                                                                                     <  7:345038/149‑1 (MQ=255)                                                                      cTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGacac                                                                                >  6:129052/1‑149 (MQ=255)                                                                         gACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCg                                                                              <  4:122746/148‑1 (MQ=255)                                                                                     cAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTc                                                                 <  7:272693/149‑1 (MQ=255)                                                                                       ggCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTa                                                               <  5:89368/149‑1 (MQ=255)                                                                                        gCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTAc                                                              >  6:96520/1‑149 (MQ=255)                                                                                             aGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACt                                                         <  5:96520/149‑1 (MQ=255)                                                                                                     tgACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCa                                                  <  5:129052/148‑1 (MQ=255)                                                                                                     tgACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAg                                                 >  3:582/1‑149 (MQ=255)                                                                                                     tgACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAg                                                 >  3:27610/1‑149 (MQ=255)                                                                                                         cgccgcTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTcgc                                             >  2:9853/1‑149 (MQ=255)                                                                                                                cAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGc                                      >  5:147347/1‑149 (MQ=255)                                                                                                                  ggCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACgcagcgcctgagcggcggtcacagtacctgcggcctgcccattcaggtcaaggcgcggtgcattctccaccatgctcgcccagtatcgagcgccccggcaccacgtggaaatgc                                    <  5:233024‑M2/149‑115 (MQ=255)                                                                                                                   gcgcTGCATGCCAAGCAGCAGGCTGCGCGGCACCgcagcgcctgagcggcggtcacagtacctgcggcctgcccattcaggtcaaggcgcggtgcattctccaccatgctcgcccagtatcgagcgccccggcaacacgtggaaatgcc                                   <  2:17896‑M2/149‑116 (MQ=255)                                                                                                                     gcTGCATGCCAAGCAGCAGGCTGCGCGGCAACgcagcgcctgagcggcggtcacagtacctgcggcctgcccattcaggtcaaggcgcggtgcattctccaccatgctcgcccagtatcgagcgccccggcaccacgtggaaatgcc                                   <  6:139458‑M2/147‑116 (MQ=255)                                                                                                                       tGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCa                                                                    >  8:302542/1‑112 (MQ=255)                                                                                                                       tGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCa                                                                    <  7:302542/112‑1 (MQ=255)                                                                                                                          aTGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGACCTCAGTCGCGTTCTGCCCCGTAGCCa                            <  1:9853/149‑1 (MQ=255)                                                                                                                             ccAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCACGTAGCCATGc                         >  4:225648/1‑149 (MQ=255)                                                                                                                               aaGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTg                       >  8:94958/1‑149 (MQ=255)                                                                                                                               aaGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTg                       >  7:78648/1‑149 (MQ=255)                                                                                                                                agcagcAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTgg                      >  5:304078/1‑149 (MQ=255)                                                                                                                                     cagGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGc                 >  2:339578/1‑149 (MQ=255)                                                                                                                                      tggCTGCGTTGCCGCGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTATCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATgg                  >  1:226349/2‑147 (MQ=255)                                                                                                                                            cgcgGCAACGCCGCCAGGACCGACGCAATCGGGCGAAGCCAAAGGCCCACGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGGCTACCGACTGAGCTCAGTCGCGTTCAGCCCCGTAGCCATGCTGGATCGCAGccc            <  6:75859/147‑1 (MQ=255)                                                                                                                                                  aaCGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCgg    >  1:196746/1‑149 (MQ=255)                                                                                                                                                   aCGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCggg   <  8:305445/149‑1 (MQ=255)                                                                                                                                                    cGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCgggg  <  5:25060/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AAGCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGG  >  NC_002947/2487902‑2488197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.