New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2857961 =	55 (0.910)	4 (0.070)	3/248	NT	8.0%	noncoding (86/88 nt)	PP_mr37	C4 ncRNA
	?	NC_002947	2858006 =	41 (0.730)					noncoding (41/88 nt)	PP_mr37	C4 ncRNA

CCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAAA  >  NC_002947/2857859‑2858148                                                                                                                                                    |                                                                                                                                               cacccattggcggcacggttttgacagaccgtggttcactgagagcatgtgcgatgccagttatggcagctgtgcgtgggttaccttcgtgtgtgcagggatTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAAt                                                                                                                                               >  3:316590‑M1/103‑149 (MQ=255) cacccattggcggcacggttttgacagaccgtggttcactgagagcatgtgcgatgccagttatggcagctgtgcgtgggttaccttcgtgtgtgcagggatTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAAt                                                                                                                                               >  3:311370‑M1/103‑149 (MQ=255)    gTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATccc                                                                                                                                            >  6:132549/1‑149 (MQ=255)     tACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCt                                                                                                                                           <  7:59399/149‑1 (MQ=255)       cGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTg                                                                                                                                          <  6:199355/148‑1 (MQ=255)       cGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGc                                                                                                                                         <  5:298747/149‑1 (MQ=255)              ccGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCacacac                                                                                                                                   >  8:95125/1‑148 (MQ=255)               acggttttgacagaccgtggttcactgagagcatgtgcgatgccagttatggcagctgtgcgtgggttaccttcgtgtgtgcagggatTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATc                                                                                                                                              >  2:338218‑M1/89‑136 (MQ=255)               acggttttgacagaccgtggttcactgagagcatgtgcgatgccagttatggcagctgtgcgtgggttaccttcgtgtgtgcagggatTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATc                                                                                                                                              <  1:338218‑M1/48‑1 (MQ=255)                gTGGATTTCGAGTTCCCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACg                                                                                                                                  >  8:143087/1‑147 (MQ=255)                     tttCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTaa                                                                                                                           >  5:259322/1‑149 (MQ=255)                     tttCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTaa                                                                                                                           >  3:229319/1‑149 (MQ=255)                       tCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACAGGGGGCACTGAGAATCCCTGCACACACGAAGGTAAcc                                                                                                                         >  7:323561/1‑149 (MQ=255)                               tcACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGTGTACATGAATCGAATACATGTTCAGAATAAACCCTCTCATTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACgcacgcac                                                                                                                  <  7:326404/148‑1 (MQ=255)                                 aCTGAAGCCCTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAg                                                                                                                <  2:308227/148‑1 (MQ=255)                                 aCTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGcaca                                                                                                                 <  3:122484/147‑1 (MQ=255)                                 aCTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGc                                                                                                               >  4:67950/1‑149 (MQ=255)                                 aCTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGc                                                                                                               >  3:57669/1‑149 (MQ=255)                                  cTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCt                                                                                                              <  3:67950/149‑1 (MQ=255)                                   tcaatcACTCAGGCAGAAACTGCCCGTATGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGTCACTGAGAATCCCTGca                                                                                                                                        <  6:123487/117‑1 (MQ=255)                                   tGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTg                                                                                                             >  6:238982/1‑149 (MQ=255)                                   tGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTg                                                                                                             >  6:218326/1‑149 (MQ=255)                                         aCTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATaa                                                                                                       <  6:259322/149‑1 (MQ=255)                                             aGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTgg                                                                                                   <  4:229319/149‑1 (MQ=255)                                                 aGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGACGGTAACCCACGCACAGCTGCCATAACTGGCATc                                                                                               <  4:57669/149‑1 (MQ=255)                                                       tGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACAt                                                                                         >  8:149816/1‑149 (MQ=255)                                                        gCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATg                                                                                        >  4:28733/1‑149 (MQ=255)                                                         cccGTAGGTGGGGGACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATg                                                                                        <  4:192622/148‑1 (MQ=255)                                                            gTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGctct                                                                                    <  1:59896/149‑1 (MQ=255)                                                               ggTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCa                                                                                  <  5:218326/148‑1 (MQ=255)                                                               ggTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCa                                                                                  <  8:293522/148‑1 (MQ=255)                                                                gTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGt                                                                                <  2:355475/149‑1 (MQ=255)                                                                       aCATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGACTCGCACATGCTCTCAGTGAACCAc                                                                         >  6:86692/1‑149 (MQ=255)                                                                            aaTCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCt                                                                    <  1:146424/149‑1 (MQ=255)                                                                             aTCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTg                                                                   >  1:214825/1‑149 (MQ=255)                                                                                gAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACAGTCTGTc                                                                 >  5:380796/1‑148 (MQ=255)                                                                                 aaTACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCa                                                                >  3:5360/1‑148 (MQ=255)                                                                                                    gattctcagtgcccccggtctgtcaacccacaaacagctgcactgagaATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGt                                                         <  1:338218‑M2/88‑1 (MQ=255)                                                                                                    gattctcagtgcccccggtctgtcaacccacaaacagctgcactgagaATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGt                                                         >  2:338218‑M2/49‑136 (MQ=255)                                                                                                     attctcagtgcccccggtctgtcaacccacaaacagctgcactgagaATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTg                                           >  3:311370‑M2/48‑149 (MQ=255)                                                                                                     attctcagtgcccccggtctgtcaacccacaaacagctgcactgagaATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTg                                           >  3:316590‑M2/48‑149 (MQ=255)                                                                                                       TCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAAATGGCATCGAACATGCTCTCAGTGAACAACGGTCTGTCAAAACCGTGCCGCCAATTGgtgtc                                         <  1:190504‑M1/149‑3 (MQ=255)                                                                                                           AGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGt                                                                  >  1:87580‑M1/1‑120 (MQ=255)                                                                                                           AGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGt                                                                  <  2:87580‑M1/120‑1 (MQ=255)                                                                                                             TGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAgg                                   >  7:143087‑M1/1‑149 (MQ=255)                                                                                                                   ggTTTGTGGGGTGACAGACCGTGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCgaga                             <  8:323561/148‑1 (MQ=255)                                                                                                                    gTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGAc                            >  6:235312/1‑149 (MQ=255)                                                                                                                     tttGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCgaga                             <  5:132549/147‑1 (MQ=255)                                                                                                                       tgtgGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACATCTGCCATAACTGGCATCGCACATGCTCTCATTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTa                          <  2:345985/148‑1 (MQ=255)                                                                                                                            gTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTAGGGCt                     >  6:139469/1‑148 (MQ=255)                                                                                                                            gTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTAGGGCt                     >  4:228095/1‑148 (MQ=255)                                                                                                                               gACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTAGGGCTGAc                  <  7:95125/148‑1 (MQ=255)                                                                                                                                   gACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTAGGGCTGACTAttt             <  3:28733/149‑1 (MQ=255)                                                                                                                                    aCCGGGCGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCACTGAACCACGCTCTGTCAAAACCGTGCCGCCAATCTGTGGCGACAGGCCGAGACTAGGGCTGACTAtta             >  6:240124/1‑147 (MQ=255)                                                                                                                                         gggCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTAGGGCTGACTATTTCCAtgt       <  5:235312/149‑1 (MQ=255)                                                                                                                                              ctgagaATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCAGATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCaaa  <  5:238982‑M2/143‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               CCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGTGGGGTACATGAATCGAATACATGTTCAGCATAAACCCTCTCAGTGCAGCTGTTTGTGGGTTGACAGACCGGGGGCACTGAGAATCCCTGCACACACGAAGGTAACCCACGCACAGCTGCCATAACTGGCATCGCACATGCTCTCAGTGAACCACGGTCTGTCAAAACCGTGCCGCCAATGGGTGGCGACAGGCCGAGACTAGGGCTGACTATTTCCATGTGCAAA  >  NC_002947/2857859‑2858148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.