New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3135652	42 (0.700)	5 (0.090)	3/256	NT	10.6%	coding (305/1335 nt)	PP_2752	hypothetical protein
	?	NC_002947	= 3135680	44 (0.760)					coding (333/1335 nt)	PP_2752	hypothetical protein

GAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTACAGCGAG  >  NC_002947/3135543‑3135821                                                                                                                                          |                                                                                                                                               gAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGc                                                                                                                                     >  3:325373/1‑149 (MQ=255)              aTGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCg                                                                                                                        <  2:333173/149‑1 (MQ=255)               tGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCgg                                                                                                                       >  8:33045/1‑149 (MQ=255)                ggCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCg                                                                                                                        <  4:34614/147‑1 (MQ=255)                ggCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCg                                                                                                                        >  3:34614/1‑147 (MQ=255)                        gCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAaggcc                                                                                                               >  3:357175/1‑148 (MQ=255)                         cTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAaggcc                                                                                                               >  1:190416/1‑147 (MQ=255)                                 gCAGGAAGTTGAGACCGAGGGGACGGCCGAGAAGGGCATCGAGTGCTACGAGAGCTTCAAGCACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGAGCCGGCTTCCTATGACCTGGCGGACAAggccgaggccga                                                                                                       <  3:230212/147‑1 (MQ=255)                                  cAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCg                                                                                                    <  5:314245/149‑1 (MQ=255)                                  cAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCg                                                                                                    >  4:81146/1‑149 (MQ=255)                                          tgAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGTTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGc                                                                                           <  1:10538/149‑1 (MQ=255)                                          tgAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCg                                                                                            <  6:379751/148‑1 (MQ=255)                                          tgAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGc                                                                                           >  5:368376/1‑149 (MQ=255)                                            agaCCGAGGGGACGGCCGAGAAGGGCAGCGAGGGCTACGAGCGCTTCAAGACCGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCt                                                                                          <  4:74441/148‑1 (MQ=255)                                             gaCCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGa                                                                                        >  3:85346/1‑149 (MQ=255)                                                cGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCa                                                                                     <  4:85346/149‑1 (MQ=255)                                                 gAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACATGGCCGAGGCCGACCGG‑ATTCCGCTGATCAc                                                                                    <  4:126049/149‑1 (MQ=255)                                                  aGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGGCAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCAcc                                                                                   >  2:365386/1‑149 (MQ=255)                                                       actgCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCgg                                                                              <  6:185939/146‑1 (MQ=255)                                                               gaAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTc                                                                      <  4:357175/149‑1 (MQ=255)                                                                       tCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAg                                                              <  4:325373/149‑1 (MQ=255)                                                                               tACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAg                                                              <  7:153552/141‑1 (MQ=255)                                                                               tACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAg                                                              >  8:153552/1‑141 (MQ=255)                                                                               tACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGa                                                      >  8:189969/1‑149 (MQ=255)                                                                                aCGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGAt                                                     >  6:345980/1‑149 (MQ=255)                                                                                 cGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATg                                                    <  7:33045/149‑1 (MQ=255)                                                                                  gAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATgg                                                   >  1:85009/1‑149 (MQ=255)                                                                                  gAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATgg                                                   >  1:25376/1‑149 (MQ=255)                                                                                        ttCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGt                                             >  1:95482/1‑149 (MQ=255)                                                                                            aGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCttt                                         <  2:190416/149‑1 (MQ=255)                                                                                                  gCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgacgccattgatgccgcct                                    <  5:284096‑M2/149‑109 (MQ=255)                                                                                                  gCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTa                                    >  1:325609/1‑148 (MQ=255)                                                                                                    cTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACaa                                 >  4:279223/1‑149 (MQ=255)                                                                                                     tCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAAc                                >  3:110148/1‑149 (MQ=255)                                                                                                        aTGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccaga                                                              <  1:326351‑M2/117‑83 (MQ=255)                                                                                                        aTGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccaga                                                              <  1:331627‑M2/117‑83 (MQ=255)                                                                                                        aTGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccaga                                                              >  2:331627‑M2/1‑35 (MQ=255)                                                                                                        aTGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccaga                                                              >  2:326351‑M2/1‑35 (MQ=255)                                                                                                         tGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTcc                            <  2:25376/149‑1 (MQ=255)                                                                                                           gcgcTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCt                          >  1:18440/1‑149 (MQ=255)                                                                                                                      gCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGGCAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGAc               <  1:365386/149‑1 (MQ=255)                                                                                                                      gCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGAc               <  3:81146/149‑1 (MQ=255)                                                                                                                          tCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTc           >  5:270047/1‑149 (MQ=255)                                                                                                                            tACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTa         >  8:50893/1‑149 (MQ=255)                                                                                                                               cAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTa         <  4:62759/146‑1 (MQ=255)                                                                                                                               cAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTa         >  3:62759/1‑146 (MQ=255)                                                                                                                                 gCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTACAGCg    <  6:270047/149‑1 (MQ=255)                                                                                                                                  cccAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTACAGCGa   <  7:189969/149‑1 (MQ=255)                                                                                                                                    cAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGTGTTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTACAGCGAg  >  1:284425/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                               GAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGG‑ATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTACAGCGAG  >  NC_002947/3135543‑3135821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.