New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3297037 =	50 (0.830)	4 (0.070)	4/256	NT	8.0%	coding (45/189 nt)	PP_2899	hypothetical protein
	?	NC_002947	3297072 =	44 (0.760)					coding (80/189 nt)	PP_2899	hypothetical protein

ACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAGGTATGGCCGGCCATGCGCT  >  NC_002947/3296929‑3297218                                                                                                                                                |                                                                                                                                                    agggcttgaccttgcgccgcagaatgccgttgatcaccacgaccaccacggcaatggcgatggccagcatctggaaggtctgctcactgatcgtgccctgcttctgcaGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGa                                                                                                                                                >  1:220564‑M1/109‑149 (MQ=255) aCCGTTGTATCATTGCCGGGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAg                                                                                                                                                 <  5:127541/148‑1 (MQ=255)       gTATCATTGCCGCGGCTCTTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAg                                                                                                                                           <  7:109775/148‑1 (MQ=255)       gTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAg                                                                                                                                           <  5:318685/148‑1 (MQ=255)                ccGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGTAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGAt                                                                                                                                   >  4:183893/1‑147 (MQ=255)                    ggCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGa                                                                                                                             <  3:135273/149‑1 (MQ=255)                       tCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAg                                                                                                                            >  1:255267/1‑147 (MQ=255)                       tCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAg                                                                                                                            >  6:287467/1‑147 (MQ=255)                              gAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTc                                                                                                                   >  6:94349/1‑149 (MQ=255)                                  cATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGTAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGa                                                                                                               <  3:183893/149‑1 (MQ=255)                                       gCCACTGATGTTGCAAGTAACATTCGATGACACACGTGCAGCGCCTAAATTATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCATGGCACGATCAGTGAGCAGAACTTCCAGATGCt                                                                                                           <  2:293180/148‑1 (MQ=255)                                         cccTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAg                                                                                                                <  8:10366/141‑1 (MQ=255)                                         cccTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAg                                                                                                                >  7:10366/1‑141 (MQ=255)                                          ccTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGt                                                                                                                               <  1:370521/125‑1 (MQ=255)                                          ccTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGt                                                                                                                               >  2:370521/1‑125 (MQ=255)                                               tGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGc                                                                                                  >  4:211415/1‑149 (MQ=255)                                                      aGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGcc                                                                                           >  5:72018/1‑149 (MQ=255)                                                         aaCATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGCCCTGTCCCACCTCCAGAAGCAGGGCACGATCAGTCACAAGACCTTCCAGATGATGCCAATGTCCATTGCCgtg                                                                                        >  1:129154/1‑149 (MQ=255)                                                           cATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCgtggt                                                                                      <  2:255267/149‑1 (MQ=255)                                                                 aTGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCgt                                                                                <  3:211415/149‑1 (MQ=255)                                                                    acacacGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCgtgg                                                                              <  2:228939/148‑1 (MQ=255)                                                                        acGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGGGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGAt                                                                          >  6:324722/1‑148 (MQ=255)                                                                        acGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGAt                                                                          >  4:132326/1‑148 (MQ=255)                                                                          gTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCaa                                                                       >  2:288265/1‑149 (MQ=255)                                                                                    tCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCgtg                                                                                        <  6:292415/122‑1 (MQ=255)                                                                                    tCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCgtg                                                                                        >  5:292415/1‑122 (MQ=255)                                                                                      aaaTATTCACTTCTGATCTTCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTgc                                                            <  5:201506/148‑1 (MQ=255)                                                                                      aaaTATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTg                                                             <  1:288265/147‑1 (MQ=255)                                                                                             cACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCaa                                                     <  6:380448/148‑1 (MQ=255)                                                                                              aCTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTg                                                             <  5:49257/139‑1 (MQ=255)                                                                                              aCTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTg                                                             >  6:49257/1‑139 (MQ=255)                                                                                              aCTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAgg                                                   >  6:273671/1‑149 (MQ=255)                                                                                               cTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGt                                                  >  7:257170/1‑149 (MQ=255)                                                                                                     atcatcCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAg                                              <  1:224686/147‑1 (MQ=255)                                                                                                       tctgcaggtgggacaggcccagcatcaggcccagtaccaccTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCt                                          >  1:220564‑M2/42‑149 (MQ=255)                                                                                                        atcCTGGTGGTACTGGGCCTGATGCTGGGCCTGACCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCt                                          >  7:36749/1‑148 (MQ=255)                                                                                                           cTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGGGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATc                                      <  5:324722/149‑1 (MQ=255)                                                                                                           cTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATc                                      >  2:272139/1‑149 (MQ=255)                                                                                                                  tACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑gg                              >  1:296783/1‑149 (MQ=255)                                                                                                                  gacaggcccagcatcaggcccagtaccaccTGCAGAAGCAGGGCACGATCAGt                                                                                                                               <  4:231356‑M2/23‑1 (MQ=255)                                                                                                                  gacaggcccagcatcaggcccagtaccaccTGCAGAAGCAGGGCACGATCAGt                                                                                                                               >  3:231356‑M2/31‑53 (MQ=255)                                                                                                                       ggCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑Gggccgg                         >  1:347612/1‑149 (MQ=255)                                                                                                                       ggCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑Gggccgg                         >  3:263611/1‑149 (MQ=255)                                                                                                                         ccTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAGGCCCTGATCTGCGCATggccggc                        >  2:79401/1‑149 (MQ=255)                                                                                                                          cTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCGACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑Gggccggc                        >  8:300289/1‑147 (MQ=255)                                                                                                                          cTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑Gggccggc                        >  6:151492/1‑147 (MQ=255)                                                                                                                           agcatcaggcccagtaccaccTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAg                     <  2:220564‑M2/128‑1 (MQ=255)                                                                                                                                cTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAGGTAt                 <  5:287467/148‑1 (MQ=255)                                                                                                                                 tGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAGGTATgg               >  4:235583/1‑149 (MQ=255)                                                                                                                                   ggCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAGGTATgg               <  3:132326/147‑1 (MQ=255)                                                                                                                                         tCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAGGTATGGCCGGCCAt       >  4:139616/1‑149 (MQ=255)                                                                                                                                           ccaccTGCAGAAGCAGGGCACGATCAGTGAGCAGCCCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAGGTATGGCCGGCCATgc     >  1:221071‑M2/6‑149 (MQ=255)                                                                                                                                               cTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAGGTATGGCCGGCCATGCGCt  >  1:360753‑M2/2‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                    ACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCCTGGTGGTACTGGGCCTGATGCTGGGCCTGTCCCACCTGCAGAAGCAGGGCACGATCAGTGAGCAGACCTTCCAGATGCTGGCCATCGCCATTGCCGTGGTGGTCGTGGTGATCAACGGCATTCTGCGGCGCAAGGTCAAGCCCTGATCTGCGC‑GGGCCGGCCAGGTATGGCCGGCCATGCGCT  >  NC_002947/3296929‑3297218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.