New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5459448 =70 (1.160)7 (0.120) 5/254 NT 9.7% coding (512/606 nt) PP_4795 lipoprotein
?NC_002947 5459476 = 63 (1.100)coding (540/606 nt) PP_4795 lipoprotein

CCGAGCAGGAAGCCAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCA  >  NC_002947/5459328‑5459613
                                                                                                                                                    |                                                                                                                                          
ggggcgagtttcatggggaacaggcggggcgcccgagggcgcccctcgcgggcttagttgcccggtacttccagtggcgattgctgaggcgtctcggcttgctggcggcgggcagcctccAGCGCGCCCAAGCCGAAGCTGCCGCGCTg                                                                                                                                            >  6:71544‑M1/121‑149 (MQ=255)
ccGAGNAGGAAGCCAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCAAAGCCGAAGCTGCCGCGCTg                                                                                                                                            >  7:341747/1‑149 (MQ=255)
 cGAGCAGGAAGCCAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTg                                                                                                                                            <  1:191237/148‑1 (MQ=255)
  ggggagtttcatgggtaacaggcggggcgcccgagggcgcccctcgcgggcttagttgcccggtacttccagtggcgattgctgaggcgtctcggcttgctggcggcgggcagcctccAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGa                                                                                                                                          >  2:282757‑M1/119‑149 (MQ=255)
  ggcgcgttccagggcgacccggcgggccgcccgcgggcgcccctcgcgggcgtagttgcccggtacttccagtggcgattgctgaggcgtctcggcttgctggcggcgggcagcctccAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGa                                                                                                                                          >  5:247709‑M1/119‑149 (MQ=255)
  gAGCAGGAAGCCAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTg                                                                                                                                            >  5:179565/1‑147 (MQ=255)
       ggAAGCCAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTg                                                                                                                                    >  4:371786/1‑149 (MQ=255)
       ggAAGCCAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTg                                                                                                                                    <  6:179565/149‑1 (MQ=255)
       ggAAGCCAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTg                                                                                                                                    <  3:371786/149‑1 (MQ=255)
             cAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCccgcc                                                                                                                              >  4:91035/1‑149 (MQ=255)
             cAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCccgcc                                                                                                                              >  2:249318/1‑149 (MQ=255)
              aaaCGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACAGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCccgccg                                                                                                                             >  8:82009/1‑149 (MQ=255)
                 cgcgCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCa                                                                                                                          <  3:91035/149‑1 (MQ=255)
                 cgcgCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCa                                                                                                                          <  1:249318/149‑1 (MQ=255)
                   cgcCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGc                                                                                                                        <  7:53541/149‑1 (MQ=255)
                       cgcgAAGAAATGCGCCGCGACCTGGTCAACGCCATGGCCGTACGGTTGCAGATGCTGTCCCCGCCCCCACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGACGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGc                                                                                                                    <  7:346491/149‑1 (MQ=255)
                        gcgAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCACCTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGcc                                                                                                                   <  3:348970/149‑1 (MQ=255)
                         cgAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGTCGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCg                                                                                                                  <  2:124300/149‑1 (MQ=255)
                          gaagaaATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGcc                                                                                                                   >  4:152472/1‑147 (MQ=255)
                          gaagaaATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGcc                                                                                                                   >  6:35140/1‑147 (MQ=255)
                          gaagaaATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCga                                                                                                                 <  3:332805/149‑1 (MQ=255)
                          gaagaaATGAGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGACGCGCTGGAGGCTGCCCGCCGCCAGCAAGcc                                                                                                                   >  5:48607/1‑147 (MQ=255)
                            agaaATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCgaga                                                                                                               <  7:82009/149‑1 (MQ=255)
                              gcccgagggcgcccctcgcgggcttagttgcccggtacttccagtggcgattgctgaggcgtctcggcttgctggcggcgggcagcctccAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGa                                                                                                                                          <  5:202492‑M1/31‑1 (MQ=255)
                              gcccgagggcgcccctcgcgggcttagttgcccggtacttccagtggcgattgctgaggcgtctcggcttgctggcggcgggcagcctccAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGa                                                                                                                                          >  6:202492‑M1/91‑121 (MQ=255)
                                    gccgcGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAg                                                                                                       <  3:321242/149‑1 (MQ=255)
                                    gccgcGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAg                                                                                                       >  8:38958/1‑149 (MQ=255)
                                      cgcgACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGc                                                                                                      >  4:298594/1‑148 (MQ=255)
                                               gTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACt                                                                                            >  4:23818/1‑149 (MQ=255)
                                                tCAACGCCATGGTCGTAAGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTg                                                                                           <  5:98459/149‑1 (MQ=255)
                                                tCAACGCCATGGTCGTAAGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTg                                                                                           <  5:93336/149‑1 (MQ=255)
                                                  aaCGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTgg                                                                                          >  2:275429/1‑148 (MQ=255)
                                                  aaCGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTgg                                                                                          >  8:200806/1‑148 (MQ=255)
                                                  aaCGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTgg                                                                                          <  8:286946/148‑1 (MQ=255)
                                                   aCGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGaa                                                                                        <  1:92885/149‑1 (MQ=255)
                                                    cGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAg                                                                                       >  5:74575/1‑149 (MQ=255)
                                                       cATGGTCGTACGTTTGCAGATGCTGTCACCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTTGAAGTAc                                                                                    >  2:279352/1‑149 (MQ=255)
                                                        aTGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATTAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTCGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAc                                                                                    <  1:275429/149‑1 (MQ=255)
                                                              gTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGaa                                                                                        <  7:92532/138‑1 (MQ=255)
                                                              gTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGaa                                                                                        >  8:92532/1‑138 (MQ=255)
                                                              gTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCaa                                                                             >  3:11147/1‑149 (MQ=255)
                                                                   tttGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGAGTAAAGCAGACGAGAGCGCCCAACCCGAAGCTGCCGCGATGGAGGCTGCACGCCTCAAGCAAGCCGACACGCCTCAGCAATCGCAACTGGAAGTACCGGGCAACGAAg                                                                        >  4:74524/1‑149 (MQ=255)
                                                                       cAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGCCGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCcg                                                                    >  3:211482/1‑149 (MQ=255)
                                                                       cAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGAAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCAGAGAAGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCcg                                                                    >  7:249535/1‑149 (MQ=255)
                                                                            gCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAgg                                                               >  8:191165/1‑149 (MQ=255)
                                                                             cTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCTAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAggg                                                              <  8:341747/149‑1 (MQ=255)
                                                                                tCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGgc                                                            >  8:138092/1‑148 (MQ=255)
                                                                                tCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGgc                                                            <  7:138092/148‑1 (MQ=255)
                                                                                  cccGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGcc                                                         >  1:99443/1‑149 (MQ=255)
                                                                                  cccGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGcc                                                         >  6:344430/1‑149 (MQ=255)
                                                                                   ccGCCCCAACGGGATGAGCTGCAGCGTAAAGCAGACGAGCCCGCCCCAGCCCAAGCGGCCGCGCTGGAGGCTGCCCGCCGCCAGCCAGCCGAGACGCCGCCCCAATCGACACAGTAAGTACCCGGCAACAAATCCAGCCAGCGGCGccc                                                        >  8:307761/1‑149 (MQ=255)
                                                                                      ccccAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCg                                                     <  7:38958/149‑1 (MQ=255)
                                                                                        ccAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGCGCGCCCTCggg                                                   >  7:109250/1‑149 (MQ=255)
                                                                                           aCTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGgcgc                                                <  3:298594/149‑1 (MQ=255)
                                                                                            cTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGcc                                               <  3:23818/149‑1 (MQ=255)
                                                                                             tGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAgg                                                               >  4:124337/1‑132 (MQ=255)
                                                                                             tGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAgg                                                               <  3:124337/132‑1 (MQ=255)
                                                                                                aTGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGc                                           <  7:200806/149‑1 (MQ=255)
                                                                                                   aGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCGGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAACCCCGCGAGGGGCGCCCGAGGGCGcccctcgc                                         <  4:802/148‑5 (MQ=255)
                                                                                                   aGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGcccctcgc                                         <  5:344430/148‑5 (MQ=255)
                                                                                                        cAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTccc                                   <  8:207790/149‑1 (MQ=255)
                                                                                                         agggTAAAGCAGACGAGCGCGCCCATGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCGGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTccgc                                  <  8:249535/146‑3 (MQ=255)
                                                                                                          gCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCa                                 <  5:35140/149‑1 (MQ=255)
                                                                                                           cGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCAt                                <  4:342079/149‑1 (MQ=255)
                                                                                                                   aGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTGCCCCCTGAAACTCg                        >  2:213073/1‑149 (MQ=255)
                                                                                                                    gACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGc                       >  2:92822/1‑149 (MQ=255)
                                                                                                                     tccagcgcggcagcttcggcttgggcgcgctGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTACGCCCGCGAGGGGCGCCCGCGGGCGGCCCGCCGGGTCGCCCTGGAACGCGcc                      >  5:247709‑M2/32‑149 (MQ=255)
                                                                                                                     tccagcgcggcagcttcggcttgggcgcgctGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGgc                                                  <  5:202492‑M2/90‑1 (MQ=255)
                                                                                                                     tccagcgcggcagcttcggcttgggcgcgctGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGgc                                                  >  6:202492‑M2/32‑121 (MQ=255)
                                                                                                                     tccagcgcggcagcttcggcttgggcgcgctGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTACCCATGAAACTcccc                      >  2:282757‑M2/32‑149 (MQ=255)
                                                                                                                       cagcgcggcagcttcggcttgggcgcgctGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGcccc                    >  6:71544‑M2/30‑149 (MQ=255)
                                                                                                                        agcgcggcagcttcggcttgggcgcgctGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAAt                                                                                                   <  7:353933‑M2/41‑1 (MQ=255)
                                                                                                                        agcgcggcagcttcggcttgggcgcgctGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAAt                                                                                                   >  8:353933‑M2/29‑69 (MQ=255)
                                                                                                                         GCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCGGTTCGCCATGAAACGCGCCCCCg                  <  6:370573‑M1/149‑1 (MQ=255)
                                                                                                                                 aaGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTc          <  7:307761/149‑1 (MQ=255)
                                                                                                                                  aGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGCGCGCCCCGCCAGGTCCCCAAGAGACAAGGcccccccccccgc          >  4:198106/1‑143 (MQ=255)
                                                                                                                                     cGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTcaac       >  2:48435/1‑148 (MQ=255)
                                                                                                                                     cGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCCCCCAAcaaaac       >  2:178082/1‑143 (MQ=255)
                                                                                                                                       aaGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTGGCCCATGCAAATCGCCCCCGCCCACAGCAACAAg    >  1:223960/1‑149 (MQ=255)
                                                                                                                                         gCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCa  >  3:67491/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                          
CCGAGCAGGAAGCCAAACGCGCCCGCGAAGAAATGCGCCGCGACCTGGTCAACGCCATGGTCGTACGTTTGCAGATGCTGTCCCCGCCCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCA  >  NC_002947/5459328‑5459613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.