New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1780066	6 (0.180)	9 (0.290)	9/276	2.3	58.6%	intergenic (+25/+81)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780129 =	7 (0.220)					intergenic (+88/+18)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase

CTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAT  >  NC_002947/1779919‑1780191                                                                                                                                                    |                                                                                                                               cTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCG                                                                                                                                >  7:12815‑M1/1‑148 (MQ=255)           aGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGcgaa                                                                                                                      <  3:116457/148‑4 (MQ=255)              ggTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTAGTGGGTGTGCTGGTTATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggg                                                                                                                   <  6:124778‑M1/148‑14 (MQ=255)                 tGGAGCTGTACAACCTGCATGGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCACGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggtt                                                                                                                <  8:116885‑M1/148‑17 (MQ=255)                                       tCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaagg                                                                                          >  7:100022‑M1/1‑110 (MQ=255)                                          gCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGATCCGGGGTTCAGTCAAGTCGCCCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgc                                                                                       <  1:45010‑M1/148‑42 (MQ=255)                                          gCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAgcg                                                                                       <  8:36632/148‑1 (MQ=255)                                                           cggtggtGCGGCAAGTACGGGGGGCGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCACCGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCg                                                                      <  5:28383/147‑1 (MQ=255)                                                            ggtggtGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCgg                                                                     <  8:42393/148‑1 (MQ=255)                                                             gtggtgCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctccgccgcttc                                                                    >  5:98906‑M1/1‑88 (MQ=255)                                                             gtggtgCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCGCCCACCGGTCCGGCGCGGCGGGTGCCATCCGCGCGGTACCCGGGGGAGCggg                                                                    >  1:104270/1‑148 (MQ=255)                                                                gtgCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctccgccgcttcgat                                                                 <  4:39694‑M1/148‑64 (MQ=255)                                                                                                   ggCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctccgccgcttcgatgcattcggccagcggtgcaaccagtgccatgcgca                              <  8:100022‑M1/148‑99 (MQ=255)                                                                                                         ccTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctccgccgcttcgatgcattcggccagcgg                                                  >  6:40716‑M1/1‑44 (MQ=255)                                                                                                          cTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctccgccgcttcgatgcattcggccagcggt                                                 <  5:40716‑M1/122‑80 (MQ=255)                                                                                                                              ccTATCAAGGCCCTTCGCGGGCGCGCCCCCGACCACCGGTAAAGCGCTGCGCGTGGAAAAACCGCGGTACCGGTGGGAGCGGGCCTGCCCGCGAACGGGGTGATAACCCGGTTTTG‑AGGAAGGCGCGAAAGCCCAGCCCCGCGTCGAt  >  4:163588/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                               CTGAGGGCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAT  >  NC_002947/1779919‑1780191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.