New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1780066	6 (0.180)	9 (0.290)	9/276	2.3	58.6%	intergenic (+25/+81)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780129 =	7 (0.220)					intergenic (+88/+18)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase

CTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCA  >  NC_002947/1779994‑1780261                                                                                                                                        |                                                                                                                                      ggttggagctgtacaacctgcatcgtcagcacctggtgggggatgaggtggtgcggcaagtagtgggtgtgctggttatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAggg                                                                                                                           <  6:124778‑M2/13‑1 (MQ=255)    tggagctgtacaacctgcatggtcagcacctggtgggggatgaggtggtgcggcaagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcacgtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGtt                                                                                                                        <  8:116885‑M2/16‑1 (MQ=255)                          tcagcacctggtgggggatgaggtggtgcggcaagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAgg                                                                                                 >  7:100022‑M2/111‑148 (MQ=255)                             gcacctggtgggggatgaggtggtgcggcaagtactgggtgagctggatatgagtgaggcgatccggggttcagtcaagtcgcccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGgcgc                                                                                              <  1:45010‑M2/41‑1 (MQ=255)                                                gtggtgcggcaagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTc                                                                           >  5:98906‑M2/89‑148 (MQ=255)                                                   gtgcggcaagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAt                                                                        <  4:39694‑M2/63‑1 (MQ=255)                                                   ccTATCAAGGCCCTTCGCGGGCGCGCCCCCGACCACCGGTAAAGCGCTGCGCGTGGAAAAACCGCGGTACCGGTGGGAGCGGGCCTGCCCGCGAACGGGGTGATAACCCGGTTTTG‑AGGAAGGCGCGAAAGCCCAGCCCCGCGTCGAt                                                                        >  4:163588/1‑148 (MQ=255)                                                                           gcCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAg                                                >  2:121458/1‑148 (MQ=255)                                                                                    cacaGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATg                                         <  1:121458/146‑1 (MQ=255)                                                                                     acaGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgcgc                                      >  4:18779/1‑148 (MQ=255)                                                                                      ggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCa                                     <  8:100022‑M2/98‑1 (MQ=255)                                                                                         gTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAcgc                                  >  7:139396/1‑148 (MQ=255)                                                                                            cctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCgg                                                         >  6:40716‑M2/45‑122 (MQ=255)                                                                                             ctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGt                                                        <  5:40716‑M2/79‑1 (MQ=255)                                                                                                  tgcgctAGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGACTGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAc                         >  5:80785/1‑148 (MQ=255)                                                                                                                         cTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGTCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCa  >  6:3116/1‑148 (MQ=255)                                                                                                                                        |                                                                                                                                      CTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCA‑GCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCA  >  NC_002947/1779994‑1780261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.