New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 55218884 (1.400)5 (0.090) 5/254 NT 6.1% coding (488/603 nt) rplD 50S ribosomal protein L4
?NC_002947 = 552215 73 (1.260)coding (515/603 nt) rplD 50S ribosomal protein L4

CGTAGCGACCGTCTGGTCGTGGTTCAGGACTTCGCTGTTGAAGCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/552037‑552188
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctTGGACGTCACGTACGTCGACGTGCGGCAGGTTACGAGCAGCCAGGTACAGGTTCTGATCAACAGCGTCGGAAACGATCAGTACATCGCTCAGACCCATGCCGTTCAGCTTGTTCAGCAGATCTTTGGTTTTCGGTGCTTCAACAGC  <  NC_002947/552215‑552070
                                                                                                                                                                                                                                                                                                          
CGTAGCGACCGTCTGGTCGTTGTTCAGTACTTCGCTGTTGAAGCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAA                                                                                                                                                       <  7:6332/149‑1
 GTAGCGACCGTCTGGTCGTGGTTCAGGACTTCGCTGTTGAAGCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAAC                                                                                                                                                      <  3:275383/149‑1
   AGCGACCGTCTGGTCGTGGTTCAGGACTTCGCTGTTGAAGCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAACCT                                                                                                                                                    >  2:203388/1‑149
                                       GAAGCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAACCTTGGACGTCACGTACGTCGACGTGCGGCAGGTTAC                                                                                                                  >  3:3879/1‑147
                                        AAGCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAACCTTGGACGTCACGTACGTCGACGTGCGGCAGGTTACGA                                                                                                                <  4:3879/148‑1
                                          GCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAACCTTGGACGTCACGTACGTCGACGTGCGGCAGG                                                                                                                      <  7:144274/140‑1
                                          GCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAACCTTGGACGTCACGTACGTCGACGTGCGGCAGG                                                                                                                      >  8:144274/1‑140
                                              CGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGGAACCTTGGACGTCACGTACGTCGACGTGCGGCAGGTTACGAGCAGCCA                                                                                                         <  6:356419/149‑1
                                                                                                                                                   AACCTTGGACGTCACGTACGCCGACGTGCGGCAGGTTACGAGCAGCCAGGTACAGGTTCTGATCAACAGCGTCGGAAACGATCAGTACATCGCTCAGACCCATGCCGTTCAGCTTGTTCAGCAGATCTTTGGTTTTCGGTGCTTCAACA    <  3:147218/149‑1
                                                                                                                                                     CCTTGGACGTCACGTACGTCGACGTGCGGCAGGTTACGAGCAGCCAGGTACAGGTTCTGATCAACAGCGTCGGAAACGATCAGTACATCGCTCAGACCCATGCCGTTCAGCTTGTTCAGCAGATCTTTGGTTTTCGGTGCTTCAACAGC  <  4:138032/149‑1
                                                                                                                                                                                                                                                                                                          
CGTAGCGACCGTCTGGTCGTGGTTCAGGACTTCGCTGTTGAAGCACCGAAAACCAAAGATCTGCTGAACAAGCTGAACGGCATGGGTCTGAGCGATGTACTGATCGTTTCCGACGCTGTTGATCAGAACCTGTACCTGGCTGCTCGTAACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/552037‑552188
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctTGGACGTCACGTACGTCGACGTGCGGCAGGTTACGAGCAGCCAGGTACAGGTTCTGATCAACAGCGTCGGAAACGATCAGTACATCGCTCAGACCCATGCCGTTCAGCTTGTTCAGCAGATCTTTGGTTTTCGGTGCTTCAACAGC  <  NC_002947/552215‑552070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.