New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 619226 = | 86 (1.430) | 5 (0.090) | 4/250 | NT | 5.9% | coding (772/1329 nt) | pfeS‑I | histidine kinase |
? | NC_002947 | 619283 = | 77 (1.350) | coding (715/1329 nt) | pfeS‑I | histidine kinase |
GGAGCGGCGTGATGAGCTGGGTGAGCTGGCTCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCATCGCCCATGACAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/619380‑619226 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacagcgTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCCCGCAGGGC > NC_002947/619283‑619424 GGAGCGGCGTGATGAGCTGGGTGAGCTGGCTCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCATCGCCCATG < 3:267027/149‑1 CGGCGTGATGAGCTGGGTGAGCTGGCTCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCATCGCCCATGACAG < 6:33039/149‑1 CACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCATCGCCCATGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCAC > 5:75360/1‑149 CACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCATCGCCCATGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAG < 3:371557/121‑1 CACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCATCGCCCATGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAG > 4:371557/1‑121 GCACGCCGCTGGCGCGGCTGCGCATCGCCCATGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGGAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTC > 7:198281/1‑136 GCACGCCGCTGGCGCGGCTGCGCATCGCCCATGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTC < 8:198281/136‑1 agtCAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCCCGCAGG < 8:280933/145‑1 GACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTTGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCCCGCAGGGC < 6:297762/149‑1 CGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCCCGCAG > 3:223264/1‑141 CGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCCCGCAG < 4:223264/141‑1 GGAGCGGCGTGATGAGCTGGGTGAGCTGGCTCAGGCCTTCGAGCACATGGCCGGGCGCCTGCGCCAGAGCCTTGAGCAACAGCGCCTGCTGTTGCGCACGCTGTCTCACGAATTGCGCACGCCGCTGGCGCGGCTGCGCATCGCCCATGACAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/619380‑619226 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacagcgTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGGGCGGGGCTGTCCAGATCATCGGCCCGCAGGGC > NC_002947/619283‑619424 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |