| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 693480 = | 56 (0.930) | 5 (0.090) | 5/252 | NT | 8.2% | coding (562/918 nt) | PP_0595 | LysR family transcriptional regulator |
| ? | NC_002947 | 693523 = | 58 (1.010) | coding (519/918 nt) | PP_0595 | LysR family transcriptional regulator | |||||
TCCAGATCCGCATGATCGCCCCCAGCCAGGTCGAGCACGGCGTGCTCGACGGCAGCCTGCACGTTGGCGTCGTACCACAGACCAGCCCGTTATCGGGGCTTGAGTATCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/693629‑693480‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttgATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACGCCGTGCTCGACCTGGCTGGGGGCGATCATGCGGATCTGGATGCGCACATCAGGGCCCCGATCCTTGAGTTCCGCCAGGGC > NC_002947/693523‑693669 TCCAGATCCGCATGATCGCCCCCAGCCAGGTCGAGCACGGCGTGCTCGACGGCAGCCTGCACGTTGGCGTCGTACCACAGACCAGCCCGTTATCGGGGCTTGAGTATCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGG > 7:6758/1‑147TCCAGATCCGCATGATCGCCCCCAGCCAGGTCGAGCACGGCGTGCTCGACGGCAGCCTGCACGTTGGCGTCGTACCACAGACCAGCCCGTTATCGGGGCTTGAGTATCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGG < 8:6758/147‑1 ATCCGCATGATCGCCCCCAGCCAGGTCGAGCACGGCGTGCTCGACGGCAGCCTGCACGTTGGCGTCGTACCACAGACCAGCCCGTTATCGGGGCTTGAGTATCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGtctcaat > 1:40399/1‑141 GTCGAGCACGCCGTGCTCGACGGCAGCCTGCACGTTGGCGTCGTACCACAGACCAGCCCGTTATCGGGGCTTGAGTATCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGGTT < 7:92113/120‑1 GTCGAGCACGCCGTGCTCGACGGCAGCCTGCACGTTGGCGTCGTACCACAGACCAGCCCGTTATCGGGGCTTGAGTATCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGGTT > 8:92113/1‑120 ATCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGGTTGATACTCAAGCCACGATAACGGGCTGGTCTGTGGTACGACGCCAAAGTGCAGGCTGCCGTAGAGCACGCCGTGCTCGACCTGGCTGGGGGCGATCATGCGGATCT > 4:216713/1‑149 TCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGGTTGATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACGCCGTGCTCGACCTGGCTGGGGGCGATCATGCGGATCTG > 2:327894/1‑149 AACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGGTTGATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACCCCGTGCTCGCCCTGGCTGGGGGCGCTCATGCGGATCTGGA > 6:38933/1‑149 ACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGG > 5:226269/1‑38 ACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGG < 6:226269/38‑1 CCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGGTTGATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACGACGTGCTCGACCTGGCTGGGGGCGATCATGCGGATCTGGATG > 5:370763/1‑149 TTGTACAGCGAACGCTCGCTGCTGTAC‑‑AACGGTTGATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACGCCGTGCTCGACCTGGCTGGGGGCGATCATGCGGATCTGGATGCGCA > 5:298942/1‑148 GTTGATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACGCCGTGCTCGACCTGGCTGGGGGCGATCATGCGGATCTGGATGCGCACATCAGGGCCCCGATCCTTGA > 5:88649/1‑138 GTTGATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACGCCGTGCTCGACCTGGCTGGGGGCGATCATGCGGATCTGGATGCGCACATCAGGGCCCCGATCCTTGA < 6:88649/138‑1 TGATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACGCCGTGCTCGACCTGGCTGGGGGCGAGATTGCGGATATGGATGCGCCCATCAGGGCCCCCATCATTGAGTTCCGCCCGGGC > 7:271623/1‑149 TCCAGATCCGCATGATCGCCCCCAGCCAGGTCGAGCACGGCGTGCTCGACGGCAGCCTGCACGTTGGCGTCGTACCACAGACCAGCCCGTTATCGGGGCTTGAGTATCAACCGTTGTACAGCGAACGCTCGCTGCTGTACTGCGCGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/693629‑693480‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttgATACTCAAGCCCCGATAACGGGCTGGTCTGTGGTACGACGCCAACGTGCAGGCTGCCGTCGAGCACGCCGTGCTCGACCTGGCTGGGGGCGATCATGCGGATCTGGATGCGCACATCAGGGCCCCGATCCTTGAGTTCCGCCAGGGC > NC_002947/693523‑693669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |