| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1155357 = | 56 (0.930) | 4 (0.070) | 4/254 | NT | 7.2% | coding (515/1455 nt) | PP_1013 | sensor histidine kinase |
| ? | NC_002947 | 1155440 = | 49 (0.850) | coding (598/1455 nt) | PP_1013 | sensor histidine kinase | |||||
GCAACAGCAAGGCCGTGGTCAGCACGATGAAGCCGATCTGCTGGCGCGGCAGGCGTTCGGCTTCCAGCCCCGTGTACGGTTCGGGCAACAGCGAGGCGATGTACAACCATTCGCCCTCGCCCAAGCGGATCTGCGTGACCAGTACCGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1155506‑1155357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggCTGGAAGCCGAACGCCTGCCGCGCCAGCAGATCGGCTTCATCGTGCTGACCACGGCCTTGCTGTTGCTGTTCATCGGCTTGCTGGTGCACTGGCAAAGCTGGCCACTGAAGCGCCTGGCGCGGGCCGCCCGAGAGATGTCGCTGGG > NC_002947/1155440‑1155585 GCAACAGCAAGGCCGTGGTCAGCACGATGAAGCCGATCTGCTGGCGCGGCAGGCGTTCGGCTTCCAGCCCCGTGTACGGTTCGGGCAACAGCGAGGCGATGTACACCCATTCGCCCTCGCCCAAGCGGATCTGCGTGACCAGTACCGGG > 5:292178/1‑149 AGCCGATCTGCTGGCGCGGCAGGCGTTCGGCTTCCAGCCCCGTGTACGGTTCGGGCAACAGCGAGGCGATGTACAACCATTCGCCCTCGCCCAAGCGGATCTGCGTGACCAGTACCGGG < 3:197453/119‑1 AGCCGATCTGCTGGCGCGGCAGGCGTTCGGCTTCCAGCCCCGTGTACGGTTCGGGCAACAGCGAGGCGATGTACAACCATTCGCCCTCGCCCAAGCGGATCTGCGTGACCAGTACCGGG > 4:197453/1‑119 GCCCCGTGTACGGTTCGGGCAACAGCGAGGCGATGTACAACCATTCGCCCTCGCCCAAGCGGATCTGCGTGACCAGTACCGGGGCTGGAAGCCGAACGCCTGCCGCGCCAGCAGATCGGCTTCATCGTGCTGCCCACGGCCTTGCgggt > 4:224869/1‑145 CCCCGTGTACGGTTCGGGCAACAGCGAGGCGATGTACAACCATTCGCCCTCGCCCAAGCGGATCTGCGTGACCAGTACCGGGGCTGGAAGCCGAACGCCTGCCGCGCCAGCAGATCGGCTTCATCGTGCTGACCACGGCCTTGCTGTTG > 8:217951/1‑149 CGGTTCGGGCAACAGCGAGGCGATGTACAACCATTCGCCCTCGCCCAAGCGGATCTGCGTGACCAGTACCGGGGCTGGAAGCCGAACGCCTGCCGCGCCAGCAGATCGGCTTCATCGTGCTGACCACGGCCTTGCTGTTGCTGTTCATC < 7:217951/149‑1 TTCGCCCTCGCCCAAGCTGATCTGCGTGACCAGTACCGTGGCTGGAAGCCGAACGCCTGCCGCGCCAGCAGATCGGCTTCATCGTGCTGACCACGGCCTTGCTGTTGCTGTTCATCGGCTTGCTGGTGCACTGGCAAAGCTGGCCACTG < 3:224869/149‑1 GGGGCTGGAAGCCGAACGCCTGCCGCGCCAGCAGATCGGCTTCATCGTGCTGACCACGGCCTTGCTGTTGCTGTTCATCGGCTTGCTGGTGCACTGGCAAAGCTGGCCACTGAAGCGCCTGGCGCGGGCCGCCCGAGAGATGTCGCTGG > 1:44098/1‑149 GGGCTGGAAGCCGAACGCCTGCCGCGCCAGCAGATCGGCTTCATCGTGCTGACCACGGCCTTGCTGTTGCTGTTCATCGGCTTGCTGGTGCACTGGCAAAGCTGGCCACTGAAGCGCCTGGCGCGGGCCGCCCGAGAGATGTCGCTGGG > 5:234181/1‑149 GCAACAGCAAGGCCGTGGTCAGCACGATGAAGCCGATCTGCTGGCGCGGCAGGCGTTCGGCTTCCAGCCCCGTGTACGGTTCGGGCAACAGCGAGGCGATGTACAACCATTCGCCCTCGCCCAAGCGGATCTGCGTGACCAGTACCGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1155506‑1155357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggCTGGAAGCCGAACGCCTGCCGCGCCAGCAGATCGGCTTCATCGTGCTGACCACGGCCTTGCTGTTGCTGTTCATCGGCTTGCTGGTGCACTGGCAAAGCTGGCCACTGAAGCGCCTGGCGCGGGCCGCCCGAGAGATGTCGCTGGG > NC_002947/1155440‑1155585 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |