New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1275708 =	43 (0.710)	3 (0.050)	3/250	NT	7.1%	intergenic (‑33/‑309)	PP_5463/PP_5464	hypothetical protein/hypothetical protein
	?	NC_002947	1275749 =	38 (0.670)					intergenic (‑74/‑268)	PP_5463/PP_5464	hypothetical protein/hypothetical protein

CTGGTTGCGGCGCTCCGGTGAAGGCAGACAGCCGAGCAACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1275749‑1275708 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCCCGCGCCGCGA  >  NC_002947/1275749‑1275896                                                                                                                                                                                                CTGGTTGCGGCGCTCCGGTGAAGGCAGACAGCCGAGCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGG                                           >  2:351847/1‑149  TGGTTGCGGCGCTCCGGTGAAGGCAGACAGCCGAGCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGC                                          >  4:186592/1‑149     TTGCGGCGCTCCGGTGAAGGCAGACAGCCGAGCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTG                                       <  1:351847/149‑1                                      AACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACTGAATTTTGCAATTATGGAAAGGGCGTGGCAATTTCTACTCGCAAACTCAAGCCCCGCGCC      >  7:135482/1‑149                                      AACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCTAACTCCAGCCCCGCGCC      >  5:313626/1‑149                                      AACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCCCGCG        >  3:15892/1‑147                                      AACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCCCGCG        <  4:15892/147‑1                                          AGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCCCGCGCCGCGA  <  2:327438/149‑1                                                                                                                                                                                                CTGGTTGCGGCGCTCCGGTGAAGGCAGACAGCCGAGCAACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1275749‑1275708 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCCCGCGCCGCGA  >  NC_002947/1275749‑1275896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.