New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1275708 =	43 (0.710)	3 (0.050)	3/250	NT	7.1%	intergenic (‑33/‑309)	PP_5463/PP_5464	hypothetical protein/hypothetical protein
	?	NC_002947	1275749 =	38 (0.670)					intergenic (‑74/‑268)	PP_5463/PP_5464	hypothetical protein/hypothetical protein

CCTTTCCGTAGCAGGAACCATACAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCCCGCGCCGCGA  >  NC_002947/1275602‑1275896                                                                                                                                                      |                                                                                                                                                    ccctttccctaatggcaaaatgccgttttctgtcagggatgtaagatggcactcatcgcgtgtaacgaatgctctagagaaatcagtgataccgctcatgcgtgcccTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAg                                                                                                                                                     >  2:351847‑M1/108‑149 (MQ=255) ccTTTCCGTAGCAGGAACCATACAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAgg                                                                                                                                                    <  4:127660/149‑1 (MQ=255)  cTTTCCGTAGCAGGAACCATACAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAggg                                                                                                                                                   >  1:160130/1‑149 (MQ=255)  cTTTCCGTAGCAGGAACCATACAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAggg                                                                                                                                                   >  3:142336/1‑149 (MQ=255)     tCCGTAGCAGGAACCATACAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGc                                                                                                                                                  <  8:239260/147‑1 (MQ=255)         tAGCAGGAACCATACAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCAt                                                                                                                                            <  4:18911/149‑1 (MQ=255)                    aTACAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCa                                                                                                                                 <  7:140415/149‑1 (MQ=255)                       cAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACt                                                                                                                               <  2:205982/148‑1 (MQ=255)                        aaaGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCa                                                                                                                                 >  6:56263/1‑145 (MQ=255)                        aaaGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCa                                                                                                                                 <  5:56263/145‑1 (MQ=255)                          aGATGAGAGGAAACACCACCATCCCAAGGACAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CGGCTTTAAGTTGGGTGCGCGGCTTTCTGCCGTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGAtt                                                                                                                           <  2:74570/149‑1 (MQ=255)                          aGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACAATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTAGCTAGGCAGTCTGCCATCACCTGAGCGCC‑GCAACCAGGGCACCCATGAGCGGTATCACttagt                                                                                                                           >  2:126181/1‑145 (MQ=255)                                gacgAAACACCACCATCCCAAGGATAAGTGGGAGGCTAACCATTCTCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTAGGCTGTCTGCCTTCACCGGATCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTctct                                                                                                                      <  1:126181/145‑1 (MQ=255)                                   gAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCT‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTagag                                                                                                                  >  1:76849/1‑149 (MQ=255)                                        accaccATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTc                                                                                                             >  1:327438/1‑149 (MQ=255)                                         ccaccaTCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCg                                                                                                            <  1:34637/149‑1 (MQ=255)                                          caccacCCCCAGGAAAACTGCGAGGCTAACCATTCGCTCAGATTGTCGCGGCGG‑CTGCCTTCAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGt                                                                                                           <  4:307938/149‑1 (MQ=255)                                          caccaTCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGGCCTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCg                                                                                                            >  1:98801/1‑149 (MQ=255)                                            ccaTCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTa                                                                                                         <  3:345215/149‑1 (MQ=255)                                              aTCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTaca                                                                                                       >  3:267406/1‑149 (MQ=255)                                               tcgcAAGGAAAAGTGGGAGGCTAACCTTTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGTTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTacac                                                                                                      <  7:193294/146‑1 (MQ=255)                                                 ccAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTaga                                                                                                                   <  5:267671/134‑1 (MQ=255)                                                 ccAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGCGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTaga                                                                                                                   >  6:267671/1‑134 (MQ=255)                                                         aaGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTg                                                                                            >  2:186911/1‑149 (MQ=255)                                                                 ggCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTa                                                                                    <  4:228005/149‑1 (MQ=255)                                                                  gCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTAc                                                                                   <  4:142336/149‑1 (MQ=255)                                                                      aCCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAATTTGGTTGCTGGGCTGGCTGCCTTCACCGGAGCGCC‑GCAACCAGTGCACGCATGAGAGGTATCACTGATTTCTCTAGTGCTTTCGTTACACGCGATGAGTGCCATCTTACATc                                                                                <  4:299416/148‑1 (MQ=255)                                                                                            gggg‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGATCGCC‑TCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGc                                                         <  3:310462/149‑1 (MQ=255)                                                                                            gggg‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCT‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGc                                                         <  2:76849/149‑1 (MQ=255)                                                                                              gg‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCtt                                                                                     <  1:340471/119‑1 (MQ=255)                                                                                              gg‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCtt                                                                                     >  2:340471/1‑119 (MQ=255)                                                                                              gg‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCa                                                       <  2:160130/149‑1 (MQ=255)                                                                                               g‑ctgctTTAAGGTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCTGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCAt                                                      <  4:235804/149‑1 (MQ=255)                                                                                                       tAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGa                                                >  4:9897/1‑148 (MQ=255)                                                                                                          gttggttgCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAgg                                            <  1:186911/149‑1 (MQ=255)                                                                                                          gttggttgCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAgg                                            <  2:98801/149‑1 (MQ=255)                                                                                                           ttggttgCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAggg                                           >  2:155672/1‑149 (MQ=255)                                                                                                            ctggttgcggcgctccggtgaaggcagacagccgagcaaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAggg                                           >  2:351847‑M2/43‑149 (MQ=255)                                                                                                             tggttgcggcgctccggtgaaggcagacagccgagcaaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGc                                          >  4:186592‑M2/42‑149 (MQ=255)                                                                                                                ttgcggcgctccggtgaaggcagacagccgagcaaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTg                                       <  1:351847‑M2/111‑1 (MQ=255)                                                                                                                   tCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACt                                                                                                                               >  2:225611/1‑57 (MQ=255)                                                                                                                   tCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCaa                                   >  2:368245/1‑149 (MQ=255)                                                                                                                   tCGGCTGGCTGGCCTCACCGGAGCGCCAGCAACCAGGGCACGCATGAGCGGTATCACt                                                                                                                               <  1:225611/58‑1 (MQ=255)                                                                                                                           cTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATATCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGTCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTAcg                           >  5:203297/1‑149 (MQ=255)                                                                                                                               cTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACgcgc                        >  3:348871/1‑148 (MQ=255)                                                                                                                                       gAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAg               >  6:305458/1‑149 (MQ=255)                                                                                                                                            cc‑gcAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTa                                                    <  2:323370/107‑1 (MQ=255)                                                                                                                                            cc‑gcAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTa                                                    >  1:323370/1‑107 (MQ=255)                                                                                                                                             c‑gcAAGAAGGTCACGAATGAGCGGTATCACTGAATTCGCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTAAATCCCTCAAAGAAAACTGCATTTAGCCATTAGGGAAAGGCGGGGGAAAATTCTACGCGCTAACTACAGCCccgc         >  8:213001/1‑149 (MQ=255)                                                                                                                                                 aaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACTGAATTTTGCAATTATGGAAAGGGCGTGGCAATTTCTACTCGCAAACTCAAGCCccgcgcc      >  7:135482‑M2/6‑149 (MQ=255)                                                                                                                                                 aaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCTAACTCCAGCCccgcgcc      >  5:313626‑M2/6‑149 (MQ=255)                                                                                                                                                 aaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCccgcg        >  3:15892‑M2/6‑147 (MQ=255)                                                                                                                                                 aaccaGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCccgcg        <  4:15892‑M2/142‑1 (MQ=255)                                                                                                                                                     aGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCCCGCGCCGCGa  <  2:327438‑M2/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CCTTTCCGTAGCAGGAACCATACAAAGATGAGAGGAAACACCACCATCCCAAGGAAAAGTGGGAGGCTAACCATTCGCTCAGATTGTCGCGGGGG‑CTGCTTTAAGTTGGTTGCTCGGCTGTCTGCCTTCACCGGAGCGCC‑GCAACCAGGGCACGCATGAGCGGTATCACTGATTTCTCTAGAGCATTCGTTACACGCGATGAGTGCCATCTTACATCCCTGACAGAAAACGGCATTTTGCCATTAGGGAAAGGGCGTGGCAATTTCTACGCGCAAACTCCAGCCCCGCGCCGCGA  >  NC_002947/1275602‑1275896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.