| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1311707 = | 49 (0.810) | 8 (0.150) | 8/238 | NT | 14.4% | intergenic (‑175/+103) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| ? | NC_002947 | 1311792 = | 51 (0.940) | intergenic (‑260/+18) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA | |||||
CTGGAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1311863‑1311707‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacaAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACCGCTTGC > NC_002947/1311792‑1311939 CTGGAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCC < 3:91583/148‑1 TGGAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCCGC > 2:83429/1‑149 GAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCACGCCCGCTC > 6:313343/1‑149 GGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCCGCTCCCACA > 8:45528/1‑149 CCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCCTCCGCGGCA‑GGGGCTGCTTCGCGGGCTCGCGCGCGCGCGCAGG‑GGGgcagtag > 8:271065/1‑142 GGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTC > 6:144480/1‑149 AGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCCGCCCCCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTC > 1:273122/1‑149 GCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAT > 5:354782/1‑149 CGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGC > 2:116407/1‑147 CGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCGTGCCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTT > 4:26394/1‑131 gcCAACGCCGGTGGCATCCACCGCC‑GTGGTTGCTTCGCGGGCTCGCCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGC < 6:354782/147‑1 GCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGC < 5:5584/45‑1 GCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGC > 6:5584/1‑45 CATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGG < 2:273122/149‑1 TGGATGCTTCGCGGGCTCGCCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCG < 5:144480/149‑1 CCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGT > 6:307646/1‑149 CCCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGG < 1:43299/148‑1 CCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTT > 7:340858/1‑149 CCGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTT < 1:260637/149‑1 CGCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTT > 6:353480/1‑148 GCTCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGA < 5:353480/149‑1 TCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACC > 2:271504/1‑149 TCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTC < 6:81078/76‑1 TCCCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTC > 5:81078/1‑76 CCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACCGC > 2:345424/1‑149 CCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACCGC > 8:195458/1‑149 CCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACC < 7:316420/147‑1 CCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGG < 4:256241/141‑1 CCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGG > 3:256241/1‑141 CCACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGAGCAGGGCGGCCTTCTACAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCGGTCACGCACACTGGGGTTGACCGC > 1:303950/1‑149 CACAAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACCGCT > 4:263030/1‑149 AAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACCGCTTGC < 3:240884/149‑1 AAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACCGCTTG > 2:42347/1‑148 CTGGAGAAGGCCGCCCTGCGCCTGGAAGCCATTCGCGTGCTGGTGGCTGGCTAGCGCAGGCCCCGCGCCCCTTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCA‑GTGGATGCTTCGCGGGCTCGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1311863‑1311707‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacaAG‑GGGC‑GCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTTGGGTTGACCGCTTGC > NC_002947/1311792‑1311939 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |