| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1586634 = | 61 (1.010) | 6 (0.100) | 5/254 | NT | 9.2% | coding (772/909 nt) | PP_1391 | LysR family transcriptional regulator |
| ? | NC_002947 | 1586683 = | 60 (1.040) | coding (723/909 nt) | PP_1391 | LysR family transcriptional regulator | |||||
GCAGGTCGCCGTGCCCGTATCCGGAAACATCAGTGCCAACGAGGTGATGACCCTGCAAAGGGCTGCGCTGGCTGGCGCAGGTATCACCATGCTGCCAACCTACCAGGCCGCAGACGCCATACGCCGGGGTGAACTGGTGCGTCTGCTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1586785‑1586634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGCTGGCCGGCTACCGCGAAATGCCACAAGCTGTGTCCGAAGTAGG > NC_002947/1586683‑1586828 GCAGGTCGCCGTGCCCGTATCCGGAAACATCAGTGCCAACGAGGTGATGACCCTGCAAAGGGCTGCGCTGGCTGGCGCAGGTATCACCATGCTGCCAACCTACCAGGCCGCAGACGCCATACGCCGGGGTGAACTGGTGCGTCTGCTGC < 1:134351/149‑1 AACCTACCAGGCCGCAGACGCCATACGCCGGGGTGAACTGGTGCGTCTGCTGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCAC > 6:65162/1‑149 GGCCGCAGACGCCATACGCCGGGGTGAACTGGTGCGTCTGCTGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTG > 3:6132/1‑149 GGCCGCAGACGCCATACGCCGGGGTGAACTGGTGCGTCTGCTGCCTGGTAGGTTGGCAGCATGGTGAAACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCC < 7:88757/128‑1 GGCCGCAGACGCCATACGCCGGGGTGAACTGGTGCGTCTGCTGCCTGGTAGGTTGGCAGCATGGTGAAACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCC > 8:88757/1‑128 GCCGCAGACGCCATACGCCGGGGTGAACTGGTGCGTCTGCTGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGC > 6:219354/1‑149 CCATACGCCGGGGTGAACTGGTGCGTCTGCTGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGCTGGCCGGCTA < 4:6132/149‑1 GCCTGGTAGGTTGCCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGGAGGGTCATCACGTCGATGGCACTGATGTTTCCGGATACGGGCACGGCGCCCTGCTGGCCGGCTACCGCGAAATGCCAAAAGCTGTGTCAGAAG > 5:299736/1‑147 CTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGCTGGCCGGCTACCGCGAAATGCCACAAGCTGTGTCCGAAGTAGG < 8:277589/149‑1 GCAGGTCGCCGTGCCCGTATCCGGAAACATCAGTGCCAACGAGGTGATGACCCTGCAAAGGGCTGCGCTGGCTGGCGCAGGTATCACCATGCTGCCAACCTACCAGGCCGCAGACGCCATACGCCGGGGTGAACTGGTGCGTCTGCTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1586785‑1586634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGCTGGCCGGCTACCGCGAAATGCCACAAGCTGTGTCCGAAGTAGG > NC_002947/1586683‑1586828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |