New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2054905 =	59 (0.980)	5 (0.090)	5/252	NT	8.1%	coding (46/1092 nt)	aroC	chorismate synthase
	?	NC_002947	2054977 =	57 (0.990)					coding (118/1092 nt)	aroC	chorismate synthase

TCCACCTCGTCGGCTTCCTGGCGCTGGGTGGTGTGCCGGCTGGTGCCGGGCTTGCGCCGGTCAAGGTCGTGCTGCAGGTCGGCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2055056‑2054905 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgccGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTCGATCGGCCTGCTGATCCGCAATAC  >  NC_002947/2054977‑2055122                                                                                                                                                                                                                                                                                                                 TCCACCTCGTCGGCTTCCTGGCGCTGGGTGGTGTGCCGGCTGGTGCCGGGCTTGCGCCGGTCAAGGTCGTGCTGCAGGTCGGCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCT                                                                                                                                                        <  1:266295/148‑1   CACCTCGTCGGCTTCCTGGCGCTGGGTGGTGTGCCGGCTGGTGCCGGGCTTGCGCCGGTCAAGGTCGTGCTGCAGGTCGGCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTCG                                                                                                                                                      <  6:354562/148‑1   CACCTCGTCGGCTTCCTGGCGCTGGGTGGTGTGCCGGCTGGTGCCGGGCTTGCGCCGGACAAGGTCGTGCTGCAGGTCGGCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCACCGCCGGGCC‑‑‑‑‑ATGCCTCTCGC                                                                                                                                                     >  3:285081/1‑149                           GGTGGTGTGCCGGCTGGTGCCGGGCTTGCGCCGGTCAAGGTCGTGCTGCAGGTCGGCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTC                                                                                                                                                       <  3:324583/123‑1                           GGTGGTGTGCCGGCTGGTGCCGGGCTTGCGCCGGTCAAGGTCGTGCTGCAGGTCGGCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTC                                                                                                                                                       >  4:324583/1‑123                                                                               TCGGCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAG                                                                         >  3:28583/1‑149                                                                                  GCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTG                                                                      >  3:196819/1‑149                                                                                      GGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAA                                                                  <  4:196819/149‑1                                                                                                CAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTT                                                             >  3:5989/1‑149                                                                                                                             CGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCT                           <  4:28583/149‑1                                                                                                                                                          CGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTCGATCGGCCTGCTGATCCGCAATA   >  5:359402/1‑149                                                                                                                                                           GCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTCGATCGGCCTGCTGATCCGCAATAC  <  4:261672/149‑1                                                                                                                                                                                                                                                                                                                 TCCACCTCGTCGGCTTCCTGGCGCTGGGTGGTGTGCCGGCTGGTGCCGGGCTTGCGCCGGTCAAGGTCGTGCTGCAGGTCGGCGAGGGAAATTTCCAGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCC‑‑‑‑‑ATGGCTCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2055056‑2054905 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgccGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTCGATCGGCCTGCTGATCCGCAATAC  >  NC_002947/2054977‑2055122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.