New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2105047 | 58 (0.960) | 6 (0.100) | 5/256 | NT | 10.3% | coding (2070/2193 nt) | PP_1880 | outer membrane autotransporter |
? | NC_002947 | = 2105083 | 48 (0.820) | coding (2034/2193 nt) | PP_1880 | outer membrane autotransporter |
ACGGGCGCCGACGCTCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2104936‑2105047 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accg‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCGGTGCAGGGGTGGCGGTCGCCTGGGGCGAAAAATGGCAGGCCCACGCCGACTTCGATTACAGCCATGGCAGCAAGCTTGAA < NC_002947/2105083‑2104966 ACGGGCGCCGACGCTCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAAT < 3:94825/149‑1 GGGCGCCGACGCTCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCG‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCGG < 5:94551/149‑1 GCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCG‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCGG < 1:167705/125‑1 GCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCG‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCGG > 2:167705/1‑125 CTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCG‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCG < 7:159253/123‑1 CTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCG‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCG > 8:159253/1‑123 CG‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCGGTGCAGGGGTGGCGGTCGCCTGGGGCGAAAAATGGCAGGCCCACGCCGACTTCGATTACAGCCATGGCAGCAAGCTTGAA < 3:71292/120‑1 CG‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCGGTGCAGGGGTGGCGGTCGCCTGGGGCGAAAAATGGCAGGCCCACGCCGACTTCGATTACAGCCATGGCAGCAAGCTTGAA > 4:71292/1‑120 ACGGGCGCCGACGCTCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2104936‑2105047 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accg‑CTTCAGCAGCAACCTGGCCGGTTCGCGTGCTGAAATCGGTGCAGGGGTGGCGGTCGCCTGGGGCGAAAAATGGCAGGCCCACGCCGACTTCGATTACAGCCATGGCAGCAAGCTTGAA < NC_002947/2105083‑2104966 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |