New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2105047	58 (0.960)	6 (0.100)	5/256	NT	10.3%	coding (2070/2193 nt)	PP_1880	outer membrane autotransporter
	?	NC_002947	= 2105083	48 (0.820)					coding (2034/2193 nt)	PP_1880	outer membrane autotransporter

GACGCTCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCCCGACCGAGGTACCCACTTTGCCCAGCAGCGAGTGG  >  NC_002947/2104945‑2105224                                                                                                                                           |                                                                                                                                              gACGCTCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGGCAGGTTGCTGCTGAAGCGGTTGTCGt                                                                                                                                     >  4:38760/1‑149 (MQ=255)  aCGCTCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGtt                                                                                                                                    <  2:184014/149‑1 (MQ=255)      tCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACt                                                                                                                                >  3:224402/1‑149 (MQ=255)          gCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGtt                                                                                                                                          <  8:156611/135‑1 (MQ=255)          gCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGtt                                                                                                                                          >  7:156611/1‑135 (MQ=255)           ccccATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCAc                                                                                                                           <  4:254613/149‑1 (MQ=255)              cATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCCCCCCTGCACCGATTTCAGCACGCGAAACGGCCAGCTTGCTGCTGAAg                                                                                                                                               >  3:258970/1‑126 (MQ=255)              cATGGCAGTTCATGGTTGCTGCCATGGATGTAATCGAAGTCGGCGTGGGCCTGCGATTTTTCGCCGCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAg                                                                                                                                               <  4:258970/126‑1 (MQ=255)                     gTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCg                                                                                                                 >  7:205092/1‑149 (MQ=255)                     gTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCg                                                                                                                 >  7:199768/1‑149 (MQ=255)                      ttCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGcg                                                                                                                                             <  3:71292‑M2/120‑3 (MQ=255)                      ttCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGcg                                                                                                                                             >  4:71292‑M2/1‑118 (MQ=255)                      ttCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGt                                                                                                                >  5:202401/1‑149 (MQ=255)                      ttCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGt                                                                                                                >  3:318853/1‑149 (MQ=255)                        cAATCTTGCTGGCCTGGCCGTAATCGCAGTCCGCGGGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGtt                                                                                                               <  8:97207/148‑1 (MQ=255)                         aaGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCAc                                                                                                                           >  2:105461/1‑135 (MQ=255)                         aaGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCAc                                                                                                                           <  1:105461/135‑1 (MQ=255)                          aGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGAc                                                                                                            <  5:273370/149‑1 (MQ=255)                          aGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGAc                                                                                                            <  3:219625/149‑1 (MQ=255)                             ttGCTGCCATGGCTTTAATCGATGTCGGGGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTTCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGaa                                                                                                         <  1:163693/149‑1 (MQ=255)                                   ccATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCAt                                                                                                    <  5:215203/148‑1 (MQ=255)                                          tGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAActgct                                                                                            <  8:44466/149‑1 (MQ=255)                                            tAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAActgct                                                                                            <  5:14087/147‑1 (MQ=255)                                               tCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCAc                                                                                       >  2:380681/1‑149 (MQ=255)                                                       ggCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAgg                                                                                <  4:224402/148‑1 (MQ=255)                                                            gggCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGt                                                                          >  5:31587/1‑149 (MQ=255)                                                                cTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGTTTGCTGCTGAAGCGCTAGTCGTTGACTTTCACCTGGTTGTCGTTGCCGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCa                                                                      >  7:241909/1‑149 (MQ=255)                                                                 tGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCAc                                                                     >  3:176759/1‑149 (MQ=255)                                                                   ccATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCAc                                                                     <  3:270817/147‑1 (MQ=255)                                                                        tttCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACg                                                               <  1:29560/148‑1 (MQ=255)                                                                         ttCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGc                                                             >  3:255760/1‑149 (MQ=255)                                                                              cccAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCtgtg                                                        >  8:45230/1‑149 (MQ=255)                                                                                      aCCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCt                                                <  6:31587/149‑1 (MQ=255)                                                                                         gCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTg                                               >  3:71873/1‑147 (MQ=255)                                                                                          ccACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAg                                            >  8:30337/1‑149 (MQ=255)                                                                                          ccACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAg                                            >  5:130053/1‑149 (MQ=255)                                                                                           cACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAgg                                           >  1:352697/1‑149 (MQ=255)                                                                                              cccTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTgc                                        >  7:161633/1‑149 (MQ=255)                                                                                              cccTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTgc                                        >  7:54067/1‑149 (MQ=255)                                                                                              cccTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTgc                                        >  2:76988/1‑149 (MQ=255)                                                                                                   cACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCccg                                   >  7:75522/1‑149 (MQ=255)                                                                                                    aCCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCccga                                  <  4:255760/149‑1 (MQ=255)                                                                                                     ccGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGcggtgcaggggtggcggtcgcctggggcgaaaaatggcaggcccacgccgacttcgattacagccatggcagcaagcttgaacagccatggggcgtgagcgtcggcgccc                                 <  5:94551‑M2/149‑111 (MQ=255)                                                                                                     ccGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGcggtgcaggggtggcggtcgcctggggcgaaaaatggcaggcccacgccgacttcgattacagccatggcagcaagcttgaacagc                                                         >  2:167705‑M2/1‑39 (MQ=255)                                                                                                     ccGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGcggtgcaggggtggcggtcgcctggggcgaaaaatggcaggcccacgccgacttcgattacagccatggcagcaagcttgaacagc                                                         <  1:167705‑M2/125‑87 (MQ=255)                                                                                                      cGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGcggtgcaggggtggcggtcgcctggggcgaaaaatggcaggcccacgccgacttcgattacagccatggcagcaagcttgaacag                                                          >  8:159253‑M2/1‑38 (MQ=255)                                                                                                      cGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGcggtgcaggggtggcggtcgcctggggcgaaaaatggcaggcccacgccgacttcgattacagccatggcagcaagcttgaacag                                                          <  7:159253‑M2/123‑86 (MQ=255)                                                                                                      cGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACttt                                                                                                                              >  7:33626/1‑55 (MQ=255)                                                                                                      cGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACttt                                                                                                                              <  8:33626/55‑1 (MQ=255)                                                                                                      cGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCt                                                           <  2:176305/122‑1 (MQ=255)                                                                                                      cGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCt                                                           >  1:176305/1‑122 (MQ=255)                                                                                                        aTTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCccgacc                                >  8:73791/1‑147 (MQ=255)                                                                                                        aTTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAAtcggtgcaggggtggcggtcgcctggggcgaaaaatggcaggcccacgccgacttcgattacagccatggcagcaagcttgaacagccatggggcgtgagcgtcggcgcccgt                              <  3:94825‑M2/149‑114 (MQ=255)                                                                                                                 cgcgAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCCCGACCGAGGTACCCAc                     <  7:73791/149‑1 (MQ=255)                                                                                                                   cgAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCCCGACCGAGGTACCCACtt                   >  3:166430/1‑149 (MQ=255)                                                                                                                       ccGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCCCGACCGAGGTACCCACTTTGcc               >  2:195469/1‑149 (MQ=255)                                                                                                                            cAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGTGCTGAAGGTGCGCCCGACCGAGGTACCCACTTTGCCcagca          <  4:176759/149‑1 (MQ=255)                                                                                                                                    tgctgAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCCCGACCGAGGTACCCACtt                   >  3:256051/1‑132 (MQ=255)                                                                                                                                    tgctgAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCCCGACCGAGGTACCCACtt                   <  4:256051/132‑1 (MQ=255)                                                                                                                                    tgctgAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCCCGACCGAGGTACCCACTTTGCCCAGCAGCGAGTgg  <  2:352697/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                              GACGCTCACGCCCCATGGCTGTTCAAGCTTGCTGCCATGGCTGTAATCGAAGTCGGCGTGGGCCTGCCATTTTTCGCCCCAGGCGACCGCCACCCCTGCACCGATTTCAGCACGCGAACCGGCCAGGTTGCTGCTGAAGCGGTTGTCGTTGACTTTCACCTGGTTGTCGTTGACGAACTCATGAACTGCTGCCACCCGCAGGTAGGGTTGCACGCTACGGCCTGTGCCCGCGCTGAAGGTGCGCCCGACCGAGGTACCCACTTTGCCCAGCAGCGAGTGG  >  NC_002947/2104945‑2105224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.