New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2248228	66 (1.100)	4 (0.070)	3/254	NT	5.8%	coding (1371/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
	?	NC_002947	= 2248275	66 (1.140)					coding (1324/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase

GTGATCAGGCGGCTGGAAATCACACAGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2248076‑2248228 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgTTCACCCAGACCTTCGGCTGGAGCAGCGCGCAGGTGCTTGGGCGTACCGCCGAGGAAATCGGCCTGTGGGCCGAGTCCGTCGAGCGCGCGAAACGTATCGAGCAGGTGATCCGCGAACAGGCCTTGAGTAACGTCGCCGTGGTA  <  NC_002947/2248275‑2248132                                                                                                                                                                                                                                                                                                           GTGATCAGGCGGCTGGAAATCACACAGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTC                                                                                                                                                      <  2:170484/149‑1    ATCAGGCGGCTGGAAATCACACAGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGC                                                                                                                                                   <  3:324319/149‑1                                           TTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGTTCACCCAGACCTTCGGCTGGAGCAGCGCGCAGGTGCT                                                                                                            >  1:228221/1‑149                                                   GTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGTTCACCCAGACCTTCGGCTGGAGCAGCGCGCAGGTGCTTGGGCGTA                                                                                                    <  2:228221/149‑1                                                           CCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGTTCACCCAGACCTTCGGCTGGAGCAGCGCGCAGGTGCTTGGGCGTACCGCCGA                                                                                             <  4:357284/148‑1                                                           CCACGGCGACGTTACTAAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGTTCTACGGACTCGGCCCACAGGCCGATTTCCTCGGCGTTCACCCAGACCTTCGGCTGGAGCAGCGCGCAGGTGCTTGGGCGTACCGCCGA                                                                                             <  2:162176/148‑1                                                                                                                                                     CGGCGTTCACCCAGACCTTCGGCTGGAGCAGCGCGCAGGTGCTTGGGCGTACCGCCGAGGAAATCGGCCTGTGGGCCGAGTCCGTCGAGCGCGCGAAACGTATCGAGCAGGTGATCCGCGAACAGGCCTTGAGTAACGTCGCCGTGGTA  <  7:115585/149‑1                                                                                                                                                                                                                                                                                                           GTGATCAGGCGGCTGGAAATCACACAGGTCAGCGGGTCGCCATTGCGGTGGTTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2248076‑2248228 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgTTCACCCAGACCTTCGGCTGGAGCAGCGCGCAGGTGCTTGGGCGTACCGCCGAGGAAATCGGCCTGTGGGCCGAGTCCGTCGAGCGCGCGAAACGTATCGAGCAGGTGATCCGCGAACAGGCCTTGAGTAACGTCGCCGTGGTA  <  NC_002947/2248275‑2248132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.