| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2366297 | 47 (0.780) | 4 (0.070) | 4/248 | NT | 8.9% | coding (733/906 nt) | lysR | transcriptional regulator LysR |
| ? | NC_002947 | = 2366321 | 38 (0.670) | coding (757/906 nt) | lysR | transcriptional regulator LysR | |||||
TTAACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2366145‑2366297‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacccgcCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACCCCGGCTGCACGAAAGTGCTGATCCAGACGCTG < NC_002947/2366321‑2366174 TTAACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAAC > 3:350597/1‑149 ACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCG > 6:339690/1‑149 CCAGCCTGGATACTTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAAC < 5:377921/140‑1 CCAGCCTGGATACTTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAAC > 6:377921/1‑140 GATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGAT < 8:269531/149‑1 GCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCG < 7:349160/149‑1 AGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGA > 1:259816/1‑134 AGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGA < 2:259816/134‑1 CCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACGCCGGCTGCACGAAAGTGCTGATCCAGACG > 6:265014/1‑149 CCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACCCCGGCTGCACGAAAGTGCTGATCCAGACGCTG > 5:245641/1‑149 CCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACCCCGGCTGCACGAAAGTGCTGATCCAGACGCTG > 6:355147/1‑149 TTAACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2366145‑2366297‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacccgcCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACCCCGGCTGCACGAAAGTGCTGATCCAGACGCTG < NC_002947/2366321‑2366174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |