New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2366297	47 (0.780)	4 (0.070)	4/248	NT	8.9%	coding (733/906 nt)	lysR	transcriptional regulator LysR
	?	NC_002947	= 2366321	38 (0.670)					coding (757/906 nt)	lysR	transcriptional regulator LysR

CCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATGCAGCAGGCGCTGG  >  NC_002947/2366173‑2366465                                                                                                                                                     |                                                                                                                                                 ccAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAg                                                                                                                                                  >  2:324065/1‑149 (MQ=255) ccAGCGTCTGGATCAGCACTTTCGTGCAGCCCGGGTTAACCGCCGCACCGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGCTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAg                                                                                                                                                  >  7:279506/1‑149 (MQ=255)  cAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGg                                                                                                                                                 >  6:355147‑M2/1‑148 (MQ=255)  cAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGg                                                                                                                                                 >  5:245641‑M2/1‑148 (MQ=255)     cGTCTGGATCAGCACTTTCGTGCAGCCGGCGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGgcgg                                                                                                                                              >  6:265014‑M2/1‑145 (MQ=255)           gATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGcc                                                                                                                                        <  6:305207/149‑1 (MQ=255)           gATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGc                                                                                                                                         <  2:374598/148‑1 (MQ=255)              ccgaaCTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGAt                                                                                                                                     <  1:324065/145‑1 (MQ=255)                gCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGTGCAAGGCGGGTTGCCGATcc                                                                                                                                   >  2:223241/1‑149 (MQ=255)                 cACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCg                                                                                                                                  >  5:332144/1‑149 (MQ=255)                 cACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCg                                                                                                                                  <  5:204441/149‑1 (MQ=255)                    tttCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAg                                                                                                                               >  7:230831/1‑149 (MQ=255)                               cGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTAt                                                                                                                    <  8:176007/149‑1 (MQ=255)                                    ttAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTg                                                                                                               >  5:235833/1‑149 (MQ=255)                                          gccgcACGGTCATCGAAACCACAAGTGCCGCTTCGGTGTGCGCCATGTTCAGGCAAGGCCTGGGGGTGGCGATCATCAACACGCTCAGCGGGCAGGAGGCGTCGCAAGGCCGGTTGCCTATCCACAGGTTACGGGTATCGGTGCCCTAt                                                                                                         >  4:43213/1‑149 (MQ=255)                                             gcACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAg                                                                                                      <  1:371180/149‑1 (MQ=255)                                             gcACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAg                                                                                                      <  6:187138/149‑1 (MQ=255)                                                   tCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATg                                                                                                <  6:332144/149‑1 (MQ=255)                                                         aaaCCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATa                                                                                          >  6:358093/1‑149 (MQ=255)                                                             caccaGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGa                                                                                                  >  7:242734/1‑137 (MQ=255)                                                             caccaGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGa                                                                                                  <  8:242734/137‑1 (MQ=255)                                                                 aGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGa                                                                                  <  8:171436/149‑1 (MQ=255)                                                                  gTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGAc                                                                                 >  7:219875/1‑149 (MQ=255)                                                                   tGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGAc                                                                                 >  5:352602/1‑148 (MQ=255)                                                                       gCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATcg                                                                            <  8:219875/149‑1 (MQ=255)                                                                         ttCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATcggc                                                                          <  5:339690/149‑1 (MQ=255)                                                                                 gcgcCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCAt                                                                                           >  3:269910/1‑124 (MQ=255)                                                                                 gcgcCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCAt                                                                                           <  4:269910/124‑1 (MQ=255)                                                                                   gcCATGGTCAGGCAAGGCCTGGTGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAATTCGGGTTGCCGATCCGCAGGTTACGTGTATCGTTGCCCTATAAGGTGATTCTCATACGCCCTTACCATCGGCCGGCATCgg                                                                 <  4:350597/148‑1 (MQ=255)                                                                                    ccATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGAGCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCAGGACCATCGGCCGTCAGCgg                                                                 >  8:260576/1‑147 (MQ=255)                                                                                     cATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAg                                                              >  6:280701/1‑149 (MQ=255)                                                                                         gTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGCATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCgg                                                           <  7:88313/148‑1 (MQ=255)                                                                                                        ggggTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGa                                           <  2:90240/149‑1 (MQ=255)                                                                                                               cGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGgcgggttgatgatcgccacccccaggccttgcctgaccatggcgcacaccgaagcggcactggtggtttcgatgaccgtgcggcggttaaccccggctgcacgaaagtgc                                    <  7:349160‑M2/149‑111 (MQ=255)                                                                                                                  tcatcaACCCGCTCAGCGGGCTGGAGGCGGCGCAAGgcgggttgatgatcgccacccccaggccttgcctgaccatggcgcacaccgaagcggcactggtggtttcgatgaccgtgcggcggttaaccccggct                                                <  2:259816‑M2/134‑99 (MQ=255)                                                                                                                  tcatcaACCCGCTCAGCGGGCTGGAGGCGGCGCAAGgcgggttgatgatcgccacccccaggccttgcctgaccatggcgcacaccgaagcggcactggtggtttcgatgaccgtgcggcggttaaccccggct                                                >  1:259816‑M2/1‑36 (MQ=255)                                                                                                                  tcatcaACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCgg                                 <  3:43213/149‑1 (MQ=255)                                                                                                                    atcaACCCGCTCAGCGGGCTGGAGGCGGCGCAAGgcgggttgatgatcgccacccccaggccttgcctgaccatggcgcacaccgaagcggcactggtggtttcgatgaccgtgcggcggttaaccccggctgcacgaaagtgctgatc                               <  8:269531‑M2/149‑116 (MQ=255)                                                                                                                    atcaACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCggg                                <  8:230831/148‑1 (MQ=255)                                                                                                                    atcaACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGt                               <  8:331785/149‑1 (MQ=255)                                                                                                                        aCCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCTGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAg                           <  4:42540/149‑1 (MQ=255)                                                                                                                        aCCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAg                           >  8:145964/1‑149 (MQ=255)                                                                                                                        aCCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAg                           >  4:120621/1‑149 (MQ=255)                                                                                                                        aCCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAg                           >  3:298998/1‑149 (MQ=255)                                                                                                                                 gCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGaa                  <  6:235833/149‑1 (MQ=255)                                                                                                                                    ggCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATg               >  6:135021/1‑149 (MQ=255)                                                                                                                                      cTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATATGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATg               >  2:120990/1‑147 (MQ=255)                                                                                                                                      cTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATgca             <  6:352602/149‑1 (MQ=255)                                                                                                                                         gAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATgcag            >  2:329878/1‑147 (MQ=255)                                                                                                                                                cgcAAGGCGGGTTGCCGATCCGCAGGTTCCGGGTATCGGTGCCCTAGCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATGCAGCAGGCGCTg   <  7:260576/149‑1 (MQ=255)                                                                                                                                                 gcAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATGCAGCAGGCGCTgg  <  3:168550/149‑1 (MQ=255)                                                                                                                                                 gcAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATGCAGCAGGCGCTgg  >  1:244541/1‑149 (MQ=255)                                                                                                                                                 gcAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGACCAAAGAAATGCAGCAGGCGCTgg  >  1:157915/1‑149 (MQ=255)                                                                                                                                                 gcAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGACGTTGCGGGTGCAGGCCAAAGAAATGCAGCAGGCGCTgg  >  7:221127/1‑149 (MQ=255)                                                                                                                                                 gcAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCAATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATGCAGCAGGCGCTgg  >  5:280244/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCTCAGCGGGCTGGAGGCGGCGCAAGGCGGGTTGCCGATCCGCAGGTTACGGGTATCGGTGCCCTATCAGGTGATGCTCATACGCCCGGACCATCGGCCGGCATCGGCAGCGGTGGAGCCGTTTTGCGAGGCGTTGCGGGTGCAGGCCAAAGAAATGCAGCAGGCGCTGG  >  NC_002947/2366173‑2366465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.