| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2580903 = | 49 (0.810) | 4 (0.070) | 4/250 | NT | 8.2% | coding (125/867 nt) | PP_2262 | sugar ABC transporter permease |
| ? | NC_002947 | 2580939 = | 43 (0.750) | coding (161/867 nt) | PP_2262 | sugar ABC transporter permease | |||||
GCATGGCCAGAGCGATGCCTATACCCAATGGAATTTCGATCAGCAGGACGCAGGCCGAGTAAATGAACTGGCGCAGCAATGCGTCGTGCAGCGCCGGGTCGCGCAGCACCTGGCGGTACCAGTCGGCACCGACGAAGTAGCGGCTGGACTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2581055‑2580903‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactggtACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCC > NC_002947/2580939‑2581085 GCATGGCCAGAGCGATGCCTATACCCAATGGAATTTCGATCAGCAGGACGCAGGCCGAGTAAATGAACTGGCGCAGCTATGCGTCGTGCAGCGCCGGGTCGCGCAGCACCTGGCGGTACCAGTCGGCACCGACGAAGTAGCGGCTGGAC > 5:327878/1‑149GCATGGCCAGAGCGATGCCTATACCCAATGGAATTTCGATCAGCAGGACGCAGGCCGAGTAAATGAACTGGCGCAGCAATGCGTCGTGCAGCGCCGGGTCGCGCAGCACCTGGCGGTACCAGTCGGCACCGACGAAGTAGCGGCTGGAC < 3:271754/149‑1 ATGGCCAGAGCGATGCCTATACCCAATGGAATTTCGATCAGCAGGACGCAGGCCGAGTAAATGAACTGGCGCAGCAATGCGTCGTGCAGCGCCGGGTCGCGCAGCACCTGGCGGTACCAGTCGGCACCGACGAAGTAGCGGCTGGACTG > 4:146233/1‑149 CCAATGGAATTTCGATCAGCAGGACGCAGGCCGAGTAAATGAACTGGCGCAGCAATGCGTCGTGCAGCGCCGGGTCGCGCAGCACCTGGCGGTACCAGTCGGCACCGACGAAGTAGCGGCTGGACTGGT > 1:359748/1‑129 CCAATGGAATTTCGATCAGCAGGACGCAGGCCGAGTAAATGAACTGGCGCAGCAATGCGTCGTGCAGCGCCGGGTCGCGCAGCACCTGGCGGTACCAGTCGGCACCGACGAAGTAGCGGCTGGACTGGT < 2:359748/129‑1 GGTACCAGTCGGCACCGACGAAGTAGCGGCTGGACTGGTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATA > 1:198854/1‑137 GGTACCAGTCGGCACCGACGAAGTAGCGGCTGGACTGGTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATA < 2:198854/137‑1 TACCAGTCGGCACCGACGAAGTAGCGGCTGGACTGGTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAA > 5:260766/1‑121 TACCAGTCGGCACCGACGAAGTAGCGGCTGGACTGGTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAA < 6:260766/121‑1 tGTACCGCCAGCTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGC < 8:99603/148‑1 GTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCC > 6:276779/1‑149 GTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTG > 7:355077/1‑94 GTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTG < 8:355077/94‑1 GCATGGCCAGAGCGATGCCTATACCCAATGGAATTTCGATCAGCAGGACGCAGGCCGAGTAAATGAACTGGCGCAGCAATGCGTCGTGCAGCGCCGGGTCGCGCAGCACCTGGCGGTACCAGTCGGCACCGACGAAGTAGCGGCTGGACTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2581055‑2580903‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactggtACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCC > NC_002947/2580939‑2581085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |