New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2686299	45 (0.750)	3 (0.050)	3/252	NT	6.8%	coding (1423/2388 nt)	PP_2354	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 2686323	39 (0.680)					coding (1399/2388 nt)	PP_2354	two‑component system sensor histidine kinase/response regulator

CCGTACCGAGATGTTGCCACCCAGCGTGCGGCGCAGCAGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2686150‑2686299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcACTCGCCTCACCCATATCCGCGAAGCGGGCGAGCGTGGTGCCAAGCTGACCTCGCAGTTGCTGGCCTTCTCCCGCCGCCAGCGTCTGGAGCCGGTGCCGCTGAACCTCAACCGTACCCTGGCCGGCCTGGAAGAGCTGCTGCGCC  <  NC_002947/2686323‑2686179                                                                                                                                                                                                                                                                                                         CCGTACCGAGATGTTGCCACCCAGCGTGCGGCGCAGCAGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCG                                                                                                                                                    <  1:296611/149‑1                                CGCAGCAGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCACTCGCCTCACCCATATCCGCGAAGCGGGC                                                                                                                     <  3:265085/149‑1                                            TCCAGGCTGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCACTCGCCTCACCCATATCCGCGAAGCGGGCGA                                                                                                                   <  3:70357/139‑1                                            TCCAGGCTGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCACTCGCCTCACCCATATCCGCGAAGCGGGCGA                                                                                                                   >  4:70357/1‑139                                                                                                                                                  CCCGCACTCGCCTCACCCATATCCGCGAAGCGGGCGAGCGTGGTGCCAAGCTGACCTCGCAGTTGCTGGCCTTCTCCCGCCGCCAGCGTCTGGAGCCGGTGCCGCTGAACCTCAACCGTACCCTGGCCGGCCTGGAAGAGCTGCTGCGC   >  3:98992/1‑149                                                                                                                                                   CCGCACTCGCCTCACCCATATCCGCGAAGCGGGCGAGCGTGGTGCCAAGCTGACCTCGCAGTTGCTGGCCTTCTCCCGCCGCCAGCGTCTGGAGCCGGTGCCGCTGAACCTCAACCGTACCCTGGCCGGCCTGGAAGAGCTGCTGCGCC  <  4:139111/149‑1                                                                                                                                                   CCGCACTCGCCTCACCCATATCCGCGAAGCGGGCGAGCGTGGTGCCAAGCTGACCTCGCAGTTGCTGGCCTTCTCCCGCCGCCAGCGTCTGGAGCCGGTGCCGCTGAACCTCAACCGTACCCTGGCCCGCCTGGAAGAGCTGCTGCGCC  >  8:179332/1‑149                                                                                                                                                                                                                                                                                                         CCGTACCGAGATGTTGCCACCCAGCGTGCGGCGCAGCAGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2686150‑2686299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcACTCGCCTCACCCATATCCGCGAAGCGGGCGAGCGTGGTGCCAAGCTGACCTCGCAGTTGCTGGCCTTCTCCCGCCGCCAGCGTCTGGAGCCGGTGCCGCTGAACCTCAACCGTACCCTGGCCGGCCTGGAAGAGCTGCTGCGCC  <  NC_002947/2686323‑2686179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.