New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2686299	45 (0.750)	3 (0.050)	3/252	NT	6.8%	coding (1423/2388 nt)	PP_2354	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 2686323	39 (0.680)					coding (1399/2388 nt)	PP_2354	two‑component system sensor histidine kinase/response regulator

GGCGCAGCAGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAGTTGCCCAACCGCTTCCAGCCGCTGCATCTGCTGCAGAGCG  >  NC_002947/2686179‑2686471                                                                                                                                                 |                                                                                                                                                     ggcgCAGCAGCTCTTCCAGGCGGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTgcgg                                                                                                                                                  >  8:179332‑M2/1‑145 (MQ=255) ggcgCAGCAGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTgcgg                                                                                                                                                  <  4:139111‑M2/149‑5 (MQ=255)  gcgcAGCAGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTgcggg                                                                                                                                                 >  3:98992‑M2/1‑144 (MQ=255)    gcagcaGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGcc                                                                                                                                               <  2:197055/149‑1 (MQ=255)      agcagcTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCtt                                                                                                                                             >  5:113438/1‑149 (MQ=255)      agcagcTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCtt                                                                                                                                             >  8:314938/1‑149 (MQ=255)            tctTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACAGGCTCCACACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCAAg                                                                                                                                       >  2:353304/1‑149 (MQ=255)               tCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTc                                                                                                                                    >  2:334133/1‑149 (MQ=255)                ccAGGCCGGCCAGGGGACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGt                                                                                                                                     <  8:324746/147‑1 (MQ=255)                        gccAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGc                                                                                                                           >  5:356907/1‑149 (MQ=255)                        gccAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGc                                                                                                                           <  7:340577/149‑1 (MQ=255)                               tACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATcg                                                                                                                    >  4:143862/1‑149 (MQ=255)                               tACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATcg                                                                                                                    >  4:54412/1‑149 (MQ=255)                                   gTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCAAGATCGCGCt                                                                                                                >  1:41882/1‑149 (MQ=255)                                    ttGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTc                                                                                                               <  3:139111/149‑1 (MQ=255)                                            cAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGc                                                                                                       >  3:133056/1‑149 (MQ=255)                                              cttctcccGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTg                                                                                                                             >  3:102067/7‑125 (MQ=255)                                              cttctcccGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTg                                                                                                                             <  4:102067/119‑1 (MQ=255)                                                     cGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCGTCGCCAGATCGCGCTCCACAACGCTGGCACCgg                                                                                              >  5:4615/1‑149 (MQ=255)                                                      gtcTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGt                                                                                             <  7:136922/147‑1 (MQ=255)                                                      ggCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGt                                                                                             >  6:82466/1‑149 (MQ=255)                                                       gCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGt                                                                                             >  4:95551/1‑148 (MQ=255)                                                           cAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTa                                                                                        >  2:109799/1‑149 (MQ=255)                                                                    gcggcgGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGt                                                                                 <  1:334133/147‑1 (MQ=255)                                                                       gcggGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGATACTCACCggtgcca                                                                            <  4:327112/149‑7 (MQ=255)                                                                           gagaAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGtt                                                                        <  6:356907/149‑1 (MQ=255)                                                                              aaGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTAtt                                                                     <  7:69041/149‑1 (MQ=255)                                                                               aGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCGAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTg                                                                    <  2:41882/149‑1 (MQ=255)                                                                               aGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTAttt                                                                    <  3:95551/149‑2 (MQ=255)                                                                               aGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCACGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTAtt                                                                     <  6:335947/148‑1 (MQ=255)                                                                                    aGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGt                                                                >  2:263972/1‑148 (MQ=255)                                                                                       aaCTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATg                                                            >  3:259354/1‑149 (MQ=255)                                                                                        aCTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATgc                                                           <  4:133056/149‑1 (MQ=255)                                                                                         cTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTAt                                                                      >  4:195398/1‑137 (MQ=255)                                                                                         cTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTAt                                                                      <  3:195398/137‑1 (MQ=255)                                                                                             gAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGcgccac                                                      <  7:35316/149‑1 (MQ=255)                                                                                               ggTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGcgccacgc                                                    <  3:54412/149‑1 (MQ=255)                                                                                                     cTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCg                                              >  8:28402/1‑149 (MQ=255)                                                                                                         gCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTGTCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAg                                          <  8:152934/149‑1 (MQ=255)                                                                                                         gCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAg                                          >  8:353895/1‑149 (MQ=255)                                                                                                           accacGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAGtt                                        <  5:261864/149‑1 (MQ=255)                                                                                                                  tCGCCCGCTTCGCGGATATGGGTGAGGCGAGTgcgggcgagcgtggtgccaagctgacctcgcagttgctggccttctcccgccgccagcgtctggagccggtgccgctgaacctcaaccgtaccctggccagcctgga                                           >  4:70357‑M2/1‑32 (MQ=255)                                                                                                                  tCGCCCGCTTCGCGGATATGGGTGAGGCGAGTgcgggcgagcgtggtgccaagctgacctcgcagttgctggccttctcccgccgccagcgtctggagccggtgccgctgaacctcaaccgtaccctggccagcctgga                                           <  3:70357‑M2/139‑108 (MQ=255)                                                                                                                  tCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAGTTGCCCAAc                                 >  3:264929/1‑149 (MQ=255)                                                                                                                    gCCCGCTTCGCGGATATGGGTGAGGCGAGTgcgggcgagcgtggtgccaagctgacctcgcagttgctggccttctcccgccgccagcgtctggagccggtgccgctgaacctcaaccgtaccctggccggcctggaagagctgctgcg                               <  3:265085‑M2/149‑120 (MQ=255)                                                                                                                    gCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAGTTGCCCAAc                                 <  3:143862/147‑1 (MQ=255)                                                                                                                         cTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAGTTGCCCAACCGCTTcc                          <  1:109799/149‑1 (MQ=255)                                                                                                                            cgcgGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAGTTGCCCAACCGCTTCCa                         <  6:113438/147‑1 (MQ=255)                                                                                                                                             cGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGcgccacgc                                                    >  8:63605/1‑103 (MQ=255)                                                                                                                                             cGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGcgccacgc                                                    <  7:63605/103‑1 (MQ=255)                                                                                                                                                 tGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAGTTGCCCAACCGCTTCCAGCCGCTGCATCTGCTGCAGAGCg  <  7:28402/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GGCGCAGCAGCTCTTCCAGGCCGGCCAGGGTACGGTTGAGGTTCAGCGGCACCGGCTCCAGACGCTGGCGGCGGGAGAAGGCCAGCAACTGCGAGGTCAGCTTGGCACCACGCTCGCCCGCTTCGCGGATATGGGTGAGGCGAGTGCGGGCCTTGTCCAGGTCGGCCTTGGCCAGATCGCGCTCCAGAAAGCTGGCACCGGTGAGTATCACCGTCAGCAGGTTATTGAAGTCATGCGCCACGCCAGCCGTTAGTTGCCCAACCGCTTCCAGCCGCTGCATCTGCTGCAGAGCG  >  NC_002947/2686179‑2686471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.